Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq13286 129 6e-25 seq7782 129 6e-25 seq22358 107 2e-18 seq21338 105 7e-18 >seq13286 Length=1322 Score = 129 bits (142), Expect = 6e-25 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||||||| | ||| || ||||| ||||| || ||||||||||| || ||| | Sbjct 1108 AGACGCAACACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGC 1049 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| || || || || || | |||||||| |||||||| ||||| || Sbjct 1048 CCGTCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCC 989 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || ||||| || || || | |||||| | ||||||||||| || Sbjct 988 TTGTCCTGGATCTTTTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACGTCGAGCGTG 929 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 |||||||| || || | || || ||||| |||||||| || Sbjct 928 ATGGTTTTGCCCGTCAGGGTCTTGACGAAGATTTGCATCTT 888 >seq7782 Length=16676 Score = 129 bits (142), Expect = 6e-25 Identities = 282/422 (67%), Gaps = 3/422 (1%) Strand=Plus/Plus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || |||||| | |||||||||| | ||||| ||| || ||| | ||||||||| | Sbjct 6312 CAGCACATGATCATGCGCGTGGCCATCGGCATCCACAAGGAGGACGTCGACGCCGCCATC 6371 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || || || | | ||||| || | || ||||| || | |||||| | || | Sbjct 6372 GAGACCTATAACCTCATGTCCCAAAAGCTCTTCACGCATGCCACTCCCACCCTTTTCAAC 6431 Query 7684 GCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGC 7743 || ||||| | || || | ||||| || || | || |||||| || ||| | Sbjct 6432 GCCGGCACCCCCCGCCCGCAGCTATCCTCCTGCTTCCTCCTCACCATGAAGGAGGACTCC 6491 Query 7744 ATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGA 7803 ||||| ||||| ||| |||| || | |||||| || ||||||| || |||||| Sbjct 6492 ATCGATGGCATCTACGACACCCTCAAGCAATGCGCCGCCATCTCCAAATTCGCCGGCGGG 6551 Query 7804 ATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGA 7863 || || || | | || || | |||||| | | |||| | | ||||| Sbjct 6552 ATCGGCGTGTCCATCCACAACATCCGCGCCCGTGACTCCTACATCCGCGGCTCGAACGGT 6611 Query 7864 AAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGAC 7923 | ||| |||| | | ||||||| |||| || ||||| || ||| || | || ||| Sbjct 6612 ACCTCCAACGGTATCGTGCCCATGCTGCGTGTCTTCAACGACACGGCCCGCTACGTGGAC 6671 Query 7924 CAGGGG---GGAAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGAC 7980 |||||| ||||||||||| ||| || ||||| || | |||||||||||||| ||| Sbjct 6672 CAGGGGGGGGGAAAGCGCAAGGGCTCCTTCGCCATTTACCTCGAGCCGTGGCACGCCGAC 6731 Query 7981 AT 7982 || Sbjct 6732 AT 6733 >seq22358 Length=3586 Score = 107 bits (118), Expect = 2e-18 Identities = 163/231 (71%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| || |||| || | ||| || ||||| |||||||| ||||||||||| Sbjct 3326 CCGCCTCGCAGACGCAGGACCAAGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAG 3267 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTG-CCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | ||| | ||| || ||||| ||| || || || || | |||||||| |||||||| Sbjct 3266 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGG 3207 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||||| || || || || || ||||| || || || | |||||| | || || Sbjct 3206 GATGCCCTCCTTGTCCTGGATCTTTTGCTTCACATTCTCGATGGTGTCGCTGGGCTCGAC 3147 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 ||||| || ||||| || || || | || || ||||| |||||||| || Sbjct 3146 ATCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCATCTT 3096 >seq21338 Length=400 Score = 105 bits (116), Expect = 7e-18 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| || ||||| ||||| || || |||||||| | || ||| | | ||| || Sbjct 179 ACGAGGTGGAGAGTGGACTCCTTCTGGATTTTGTAGTCCGCGACTGTGCGCGTGTCCTCC 238 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 | ||||| || || |||| | ||||| ||||||||||| ||||| || || ||| | Sbjct 239 ACCTGTTCACCCGCGTAAATGAGCCGCTGTTGATCGGGCGGGATGCCCTCCTTGACTTCA 298 Query 134625 ATTTTTTGTTTGACCGCGTCCA-AT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTT 134682 || | || || | ||||| || |||||||| | || | | || |||||||||| Sbjct 299 ATCTCCTGCTT--CAAAGTCCAGATGGTGTCGGAAGGATCGATATTGACTGTAATGGTTT 356 Query 134683 TACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || | ||||| ||||| || ||||| Sbjct 357 TGCCAGTCAGCGTTTTGACGAAGATCTGCAT 387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505248100833320