Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq566 524 8e-144 seq288 434 1e-116 seq620 203 4e-47 seq49 134 2e-26 >seq566 Length=2184 Score = 524 bits (580), Expect = 8e-144 Identities = 732/1021 (72%), Gaps = 4/1021 (0%) Strand=Plus/Plus Query 161688 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 161747 |||||| || |||| |||||| | ||||| ||||||||||| ||| |||| ||||| || Sbjct 592 TTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGC 651 Query 161748 CTTCTTCTTCTTCCCA-CTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTT 161806 ||| || || |||||| | || | |||||| |||| || ||| | || || || ||||| Sbjct 652 CTT-TTATTATTCCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTT 710 Query 161807 CGCAACGAGCTGGTATACCCATGGTCTCGCTAGTTCCTATCTTGAGGG-TGCAAACTTTC 161865 | || |||||||| ||||| | || ||| || || || || ||||| ||| Sbjct 711 TGTTACATCTTGGTATACACATGGATTAGCATCTTCTTACCTAGAAGGATGCAA-CTTCT 769 Query 161866 TTACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGG 161925 | || | | || || || || || |||||||||||| | || | | |||| Sbjct 770 TAACTGTAGCGGTATCAACACCTGCAAACAGTATGGGTCATTCCTTAATTTTATTATGGG 829 Query 161926 GTCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAATTTTG 161985 | ||||| || ||||| |||||| || ||| | ||| |||| ||| | ||| |||| Sbjct 830 GACCTGAAGCACAAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTA 889 Query 161986 TGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCAC 162045 | ||| | |||||||| || | ||||||||||| | ||||| || || | || | Sbjct 890 TCGCATTACATGGTGCATTTGGTTTAATTGGATTCTGTTTACGTCAATTCGAGATCGCTC 949 Query 162046 GTCTTATTGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTG 162105 ||||| | ||||| ||||| || || || ||||| |||||||| |||||||| || || | Sbjct 950 GTCTTGTAGGTATTCGTCCATATAACGCAATTGCATTCTCTGGACCTATTGCGGTATTCG 1009 Query 162106 TCAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTG 162165 | || ||| | ||||| || | || || | |||||||| |||||||| |||| Sbjct 1010 TTTCTGTATTCTTAATCTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTG 1069 Query 162166 GGGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTGA 162225 |||| ||||| || || | ||| | || || | ||||| |||||||||||||| || | Sbjct 1070 GGGTTGCAGCTATTTTCCGCTTCTTATTATTCTTACAAGGTTTCCATAACTGGACACTTA 1129 Query 162226 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTC 162285 |||| |||||||||||||| || || || || ||||||| ||| | ||||||| |||| Sbjct 1130 ACCCATTCCATATGATGGGCGTAGCAGGGATTTTAGGTGGTGCATTATTATCTGCAATTC 1189 Query 162286 ACGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGG 162345 | |||| || || ||||| ||| ||| || ||||| || |||||||| || | Sbjct 1190 ATGGAGCTACTGTAGAAAACACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTG 1249 Query 162346 CGTTTGATTCGACACAGGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 162405 ||||| | ||||| ||||| |||||||| ||||| || || || | ||||||| Sbjct 1250 CGTTTACACCAACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAATAGATTCTGGT 1309 Query 162406 CGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTG 162465 | || || |||||| | || || |||||||| || |||||||| || |||||||| |||| Sbjct 1310 CTCAAATTTTCGGTGTAGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATTTG 1369 Query 162466 TGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTC 162525 | || || | ||| |||||||| ||| |||| ||| | ||| | || | || | Sbjct 1370 TTCCAGTAACAGGTTTATGGACAAGTTCTTTTGGTATTGTAGGTTTAGCATTAAATTTAA 1429 Query 162526 GTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCTGAGTTTGAAACGT 162585 | || ||||| ||||| ||| || | | ||||| |||||||| || |||||||| | Sbjct 1430 GAGCATACGACTTCGTATCTCAAGAACTTCGTGCAGCTGAAGATCCAGAATTTGAAACTT 1489 Query 162586 TCTACACTAAGAACATTCTGCTCAATGAAGGACTACGTGCATGGTTAGCACCTGCCGACC 162645 |||||||||| || || | | || ||||| | | ||||| | || | |||| Sbjct 1490 TCTACACTAAAAATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAAGACC 1549 Query 162646 AACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 162705 |||| ||||| |||||| | |||||||| || ||| | || | || ||||||||||||| Sbjct 1550 AACCACATGAAAACTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAAT 1609 Query 162706 A 162706 | Sbjct 1610 A 1610 >seq288 Length=849 Score = 434 bits (480), Expect = 1e-116 Identities = 421/538 (78%), Gaps = 4/538 (1%) Strand=Plus/Plus Query 159987 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACC 160046 ||||| | || ||||||||||||| || | ||||| ||||| | || |||| || Sbjct 312 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCTACA 371 Query 160047 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAA 160106 | ||| |||||| |||| || ||||||| || || || || |||||||| ||||||||| Sbjct 372 AGCTGCTTCATCATCGCTTTTATCGCTGCACCTCCAGTTGATATCGACGGTATCCGTGAA 431 Query 160107 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCT 160166 || || ||||| ||||| | || || |||||||||||| ||||||||||| |||| | Sbjct 432 CCAGTTGCTGGATCACTTTTATACGGAAACAACATCATCACTGGTGCAGTTATTCCTAGT 491 Query 160167 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 160226 || ||| | || ||| |||||||||| || | |||||||| || || | || |||||| Sbjct 492 TCTAACTCTATCGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTTTAGACGAGTGG 551 Query 160227 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTC--CTTATCGGCATCTATG 160284 || || ||||||||||||| |||||| |||||||| |||||| ||| | | || || Sbjct 552 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCT-TG 610 Query 160285 CATATATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTG 160344 | || ||||||||||| ||||||||| ||||||||||| ||||| || ||||| | | Sbjct 611 C-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCG 669 Query 160345 TAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTATATCCTTTCGGTC 160404 |||| | || |||||||| |||||||||||||| |||||| | || || || |||| | Sbjct 670 TAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATCGGAC 729 Query 160405 AAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTG 160464 ||||| ||||| |||| ||||||| | ||||| ||||||||||| |||| |||| | | Sbjct 730 AAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAG 789 Query 160465 TATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGG 160522 ||||||||||||||||||| || |||||||| || ||||| ||| || |||||||| Sbjct 790 TATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGG 847 >seq620 Length=282 Score = 203 bits (224), Expect = 4e-47 Identities = 217/284 (76%), Gaps = 6/284 (2%) Strand=Plus/Plus Query 160527 TTCGGTGGATCTTTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTCGT 160586 || ||||| ||||| ||| |||||||||||| ||| || || || | | ||| Sbjct 2 TTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGT 61 Query 160587 GAAACGACTGAA-ACAGAGTCACAG--AACTACGGTTATAAGTTCGGTCAAGAGGAAGAG 160643 ||||| |||| || | || | | ||||||||||| || ||||| ||||| ||||| Sbjct 62 GAAAC---TGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAA 118 Query 160644 ACCTACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCA 160703 || ||||||||||| || || || |||||||| || ||||| ||||||||||| || Sbjct 119 ACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGT 178 Query 160704 TTCAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTAGTCGGAATCTGG 160763 ||||||||||| ||| | | ||||||||| | || || ||||| || || || |||||| Sbjct 179 TTCAACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGG 238 Query 160764 TTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGG 160807 || ||||||||||||||||| || |||||||||||| | || || Sbjct 239 TTAACTGCTCTTGGTGTTAGTACTATGGCATTCAACTTAAATGG 282 >seq49 Length=2147 Score = 134 bits (148), Expect = 2e-26 Identities = 125/159 (79%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 160778 TGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGG 160837 |||||| || |||||||||||| | || ||||||||||||||||| || | | ||| | Sbjct 2147 TGTTAGTACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAG 2088 Query 160838 TCAAGGTCGTGTACTGAACACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGA 160897 ||||| || || | ||||| ||||| ||| | | || ||||||| | | |||||||| Sbjct 2087 CCAAGGCCGCGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGA 2028 Query 160898 AGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGA 160936 ||| ||||| || |||||||| ||||||||||| || || Sbjct 2027 AGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGA 1989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559337610504200