Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq566 466 3e-126 seq288 439 4e-118 seq620 212 9e-50 seq49 123 4e-23 >seq566 Length=2184 Score = 466 bits (516), Expect = 3e-126 Identities = 704/989 (71%), Gaps = 14/989 (1%) Strand=Plus/Plus Query 175879 GAGATAGGTTTATCTTTATTGGCTGGTCTGGATTACTACTTCTTCCCA-CTGCTTATCTT 175937 ||||| | || | |||||||| ||||| || | || || |||||| | || | |||| Sbjct 620 GAGATCGTTTCGTATTTATTGGTTGGTCAGGCCTTTTA-TTATTCCCAACAGCATTTCTT 678 Query 175938 GCCATTGGCGGCTGGCTTACTGGCACAACTTTTGTCACGAGTTGGTACACCCATGGTCTT 175997 || |||| || ||| | || || || |||||||| || |||||| || ||||| | Sbjct 679 GCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCTTGGTATACACATGGATTA 738 Query 175998 GCTTCTTCCTATCTTGAGGG-TGCTAACTTTCTCACAGCGGCTGTCTCGACTCCTGCTGA 176056 || ||||| || || || || ||| ||||| | || | || || || || ||||| | Sbjct 739 GCATCTTCTTACCTAGAAGGATGC-AACTTCTTAACTGTAGCGGTATCAACACCTGCAAA 797 Query 176057 TGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAATCTCAGGGCGACTTCCAGCG 176116 |||||||||||| | || || | ||||| |||||| | || || || ||| || Sbjct 798 CAGTATGGGTCATTCCTTAATTTTATTATGGGGACCTGAAGCACAAGGAGATTTCACTCG 857 Query 176117 GTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGCTCTCCACGGTGCCTTCGCTCTGAT 176176 ||||| ||| |||| || | ||| | ||| | || | || ||||| || | | | || Sbjct 858 TTGGCTTCAAATTGGTGGATTATGGGCTTTTATCGCATTACATGGTGCATTTGGTTTAAT 917 Query 176177 TGGATTCATGCTT-CGTCAGTTTGAACTGGCAAGACTCATTGGTATCCGTCCCTACAACG 176235 ||||||| || || ||||| || || | || | || | ||||| ||||| || |||| Sbjct 918 TGGATTC-TGTTTACGTCAATTCGAGATCGCTCGTCTTGTAGGTATTCGTCCATATAACG 976 Query 176236 CTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAGTGTGTTTCTTCTATACCCACTAG 176295 | ||||||||| ||| ||||| || ||||| || ||| || | | || || |||| Sbjct 977 CAATTGCATTCTCTGGACCTATTGCGGTATTCGTTTCTGTATTCTTAATCTATCCTCTAG 1036 Query 176296 GTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTAT 176355 | ||| | |||||||| || || ||||| || ||||| || || | ||| ||| Sbjct 1037 GACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGCTATTTTCCGCTTCTTAT 1096 Query 176356 TGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCCCTTCCATATGATGGGAGTTGCTG 176415 | || | || |||||||| ||||||||||| ||||| |||||||||||||| || || | Sbjct 1097 TATTCTTACAAGGTTTCCATAACTGGACACTTAACCCATTCCATATGATGGGCGTAGCAG 1156 Query 176416 GTATACTAGGTGGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAAAATACCCTAT 176475 | || ||||||| ||| || |||||||||| ||||| | |||||| ||||| || |||| Sbjct 1157 GGATTTTAGGTGGTGCATTATTATCTGCAATTCATGGAGCTACTGTAGAAAACACACTAT 1216 Query 176476 ATGAAGATGGAGA-ACAGAACAACACCTTCACTGCGTTCGATTCCACGCAGGAGGAAGAG 176534 ||||||||| || | | | ||||| ||| |||||| | || || ||||| Sbjct 1217 TTGAAGATGGTGATGCTGCA-AACACATTCCGTGCGTTTACACCAACACAATCAGAAGAA 1275 Query 176535 ACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGT 176594 || ||||| ||||| || ||||| | |||||||| ||||| ||||| || || || | Sbjct 1276 ACTTATTCAATGGTAACAGCGAATAGATTCTGGTCTCAAATTTTCGGTGTAGCTTTCTCT 1335 Query 176595 AATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCA 176654 || || ||||||||||||||||| ||||| ||||| || || | ||| | ||| || Sbjct 1336 AACAAACGTTGGCTTCACTTCTTCATGTTATTTGTTCCAGTAACAGGTTTATGG---ACA 1392 Query 176655 AG---TATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAA 176711 || | |||| || | || | || | ||| | | || || || || || ||| Sbjct 1393 AGTTCTTTTGGTATTGTAGGTTTAGCATTAAATTTAAGAGCATACGACTTCGTATCTCAA 1452 Query 176712 GAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTACACAAAGAACATCCTTCTT 176771 || || | ||||| |||||||| || ||||||||||||||||| || || ||| | | Sbjct 1453 GAACTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAAATATCTTATTA 1512 Query 176772 AACGAAGGACTAAGAGCATGGATGGCACCTGTGGATCAACCACATGAGTCATTTGTATTC 176831 |||||||| | ||| |||||||||| | || ||||||||||| ||||||||| Sbjct 1513 AACGAAGGTATTAGATCATGGATGGCCGCACAAGACCAACCACATGAAAACTTTGTATTC 1572 Query 176832 CCAGAAGAAGTTCTACCTAGAGGTAACGC 176860 ||||| || ||| |||| | || ||||| Sbjct 1573 CCAGAGGAGGTTTTACCACGTGGAAACGC 1601 >seq288 Length=849 Score = 439 bits (486), Expect = 4e-118 Identities = 444/575 (77%), Gaps = 2/575 (0%) Strand=Plus/Plus Query 174459 TGGGATCAGTTTTGTTCCTGGGTCACATCAACCAACAATCGTCTTTACGTCGGTTGGTTC 174518 ||||| | || || || ||| |||| || | || ||| | ||| ||||||||||| Sbjct 276 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 335 Query 174519 GGTGTTCTAATGATTCCTACATTGTTAGCCGCAACTGTATGTTTCATTATCGCTTTCGTG 174578 |||||| ||||||| || ||||| ||| | || || || ||||| |||||||| | Sbjct 336 GGTGTTTTAATGATCCCAACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTTATC 395 Query 174579 GGTGCTCCCCCAGTGGACATCGACGGAATCCGTGAACCAGTAGCTGGTTCACTCATGTAT 174638 | ||| || ||||| || |||||||| |||||||||||||| ||||| ||||| | || Sbjct 396 GCTGCACCTCCAGTTGATATCGACGGTATCCGTGAACCAGTTGCTGGATCACTTTTATAC 455 Query 174639 GGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTACACTTC 174698 ||||||||||||||| ||||||||||| |||||||||| ||| | |||||| | |||||| Sbjct 456 GGAAACAACATCATCACTGGTGCAGTTATTCCTAGTTCTAACTCTATCGGTATTCACTTC 515 Query 174699 TACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTCTACAACGGTGGTCCTTTCCAA 174758 |||||| | |||||||| || | | ||||| ||||| |||||||||||||||| |||| Sbjct 516 TACCCAGTTTGGGAAGCTGCGTCTTTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAA 575 Query 174759 CTAGTTGTCTTCCACTTCCTTATT-GGTATCTACGCCTATATGGGACGTGAGTGGGAACT 174817 || || || || ||||| |||||| ||| | ||| ||||||||||| |||||||| Sbjct 576 CTTGTAGTATTACACTT-CTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACT 634 Query 174818 CTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCATACTCTGCACCAGTTGCAGC 174877 || |||||||| ||| | |||||||| | ||||| | ||| || ||||| || || Sbjct 635 TAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGC 694 Query 174878 AGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCAGACGCGATGCC 174937 ||| || ||||||||| |||| || || |||| |||||| ||||| || | ||||| Sbjct 695 AGCATCTGCAGTATTCTTAGTTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCC 754 Query 174938 CTTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTCCAAGCAGAACATAACATCTT 174997 || ||||| ||||| || ||||||| |||||| || |||||||||||||| ||||| | Sbjct 755 TTTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCT 814 Query 174998 GATGCACCCCTTCCACATGTTGGGAGTCGCAGGTG 175032 |||||||| ||||| ||| || || || |||| Sbjct 815 TATGCACCCATTCCATATGGCTGGTGTTGCTGGTG 849 >seq620 Length=282 Score = 212 bits (234), Expect = 9e-50 Identities = 219/284 (77%), Gaps = 6/284 (2%) Strand=Plus/Plus Query 175035 TTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTGTCCGT 175094 || ||||| || || ||| || ||||| ||||| ||||| || ||| | ||||| Sbjct 2 TTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGT 61 Query 175095 GAGACAACTGAA-ACTGAGTCACAG--AACTATGGTTACAAGTTCGGCCAAGAAGAAGAG 175151 || ||||||| || | || | | ||||| |||||||| ||||| ||||||||||| Sbjct 62 GA---AACTGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAA 118 Query 175152 ACCTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCA 175211 || || |||||||| || || || || ||||| || ||||| |||||||||||||| Sbjct 119 ACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGT 178 Query 175212 TTCAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGG 175271 ||||||||||| || | | |||||||||||||| || ||||||||||| ||||||||| Sbjct 179 TTCAACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGG 238 Query 175272 TTCACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGG 175315 || || || ||||||||| || |||||||||||| | ||||| Sbjct 239 TTAACTGCTCTTGGTGTTAGTACTATGGCATTCAACTTAAATGG 282 >seq49 Length=2147 Score = 123 bits (136), Expect = 4e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 175293 ACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGT 175352 || |||||||||||| | |||||||||||||||||||| || ||| | || | ||||| Sbjct 2140 ACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAGCCAAGGC 2081 Query 175353 AGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGTAATG 175412 | || | ||||| ||||| || || | ||| | |||| | | || |||||||||||| Sbjct 2080 CGCGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATG 2021 Query 175413 CATGAGAGAAATGCACACAACTTCCCACTAGATTTGGC 175450 || || | || || ||||||||||| |||||||| || Sbjct 2020 CACGAACGTAACGCGCACAACTTCCCTCTAGATTTAGC 1983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729712528061080