Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq566 459 3e-124 seq288 432 4e-116 seq620 194 2e-44 seq49 136 5e-27 >seq566 Length=2184 Score = 459 bits (508), Expect = 3e-124 Identities = 707/1001 (71%), Gaps = 6/1001 (1%) Strand=Plus/Plus Query 179235 GACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTT 179294 || |||||| | ||||| ||||| || || ||| | |||||||| || || || || || Sbjct 604 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGCCTTTTA-TTATT 662 Query 179295 CCCA-CTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTG 179353 |||| | || | |||||| |||| || ||| | || || || |||||||||| ||| Sbjct 663 CCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCTTG 722 Query 179354 GTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGG-TGCTAACTTTCTTACGGCAGCTG 179412 ||| || || || | || ||| || || || || ||| ||||| | || | ||| | Sbjct 723 GTATACACATGGATTAGCATCTTCTTACCTAGAAGGATGC-AACTTCTTAACTGTAGCGG 781 Query 179413 TCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 179472 | || || ||||| | |||||||||||| | || || | ||||| ||||| | | Sbjct 782 TATCAACACCTGCAAACAGTATGGGTCATTCCTTAATTTTATTATGGGGACCTGAAGCAC 841 Query 179473 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACG 179532 | || ||||| || ||| ||| |||| ||| | ||| ||| | || | || | Sbjct 842 AAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATCGCATTACATG 901 Query 179533 GTGCCTTCGCTCTCATTGGTTTCATGCTTA-GGCAATTTGAACTTGCTCGCCTGATTGGT 179591 |||| || | | | ||||| ||| || ||| | ||||| || | ||||| || | ||| Sbjct 902 GTGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTCGAGATCGCTCGTCTTGTAGGT 960 Query 179592 ATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTC 179651 || | || || || || ||||| || ||||| |||||||| |||||||| ||| ||| Sbjct 961 ATTCGTCCATATAACGCAATTGCATTCTCTGGACCTATTGCGGTATTCGTTTCTGTATTC 1020 Query 179652 CTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCG 179711 | ||||||||| | ||||| | |||||| ||||| || ||||| || || || Sbjct 1021 TTAATCTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGCT 1080 Query 179712 ATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCAT 179771 || ||| | ||||| | ||| | || |||||||| |||||||| || ||||| |||||| Sbjct 1081 ATTTTCCGCTTCTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAACCCATTCCAT 1140 Query 179772 ATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTACT 179831 |||||||| || || || || |||| || ||| | | ||| || ||||||| |||| Sbjct 1141 ATGATGGGCGTAGCAGGGATTTTAGGTGGTGCATTATTATCTGCAATTCATGGAGCTACT 1200 Query 179832 GTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCG 179891 ||||| || ||| | | ||||||||| || ||||| || || |||||| | Sbjct 1201 GTAGAAAACACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTTTACACCA 1260 Query 179892 ACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTC 179951 ||||| |||||| |||||||| ||||| || || || | |||||||| || || ||| Sbjct 1261 ACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAATAGATTCTGGTCTCAAATTTTC 1320 Query 179952 GGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATG 180011 ||| | || || |||||||| || |||||||| || |||||||| ||||| || || | Sbjct 1321 GGTGTAGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATTTGTTCCAGTAACA 1380 Query 180012 GGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGAT 180071 ||| |||||||| ||| |||| ||| | ||| | || | || | | || ||||| Sbjct 1381 GGTTTATGGACAAGTTCTTTTGGTATTGTAGGTTTAGCATTAAATTTAAGAGCATACGAC 1440 Query 180072 TTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCAAG 180131 |||||| ||| || | | ||||| |||||||| || ||||| || |||||||| || Sbjct 1441 TTCGTATCTCAAGAACTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAA 1500 Query 180132 AACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGTTGATCAACCACATGAG 180191 || || | | || ||||| | | ||||| |||| || || ||||||||||| Sbjct 1501 AATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAAGACCAACCACATGAA 1560 Query 180192 TCATTCGTATTCCCAGAAGAAGTTCTGCCAAGAGGTAATGC 180232 || ||||||||||| || ||| | ||| | || || || Sbjct 1561 AACTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGC 1601 >seq288 Length=849 Score = 432 bits (478), Expect = 4e-116 Identities = 422/540 (78%), Gaps = 4/540 (1%) Strand=Plus/Plus Query 177876 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 177935 ||||| | || ||||||||||||| || | ||||| ||||| | || |||| || Sbjct 312 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCTACA 371 Query 177936 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAA 177995 | ||| |||||| |||| || ||||||| || || || || |||||||| ||||||||| Sbjct 372 AGCTGCTTCATCATCGCTTTTATCGCTGCACCTCCAGTTGATATCGACGGTATCCGTGAA 431 Query 177996 CCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCT 178055 || || ||||| ||||| | || || |||||||||||| ||||||||||| |||| | Sbjct 432 CCAGTTGCTGGATCACTTTTATACGGAAACAACATCATCACTGGTGCAGTTATTCCTAGT 491 Query 178056 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 178115 || ||| | || ||| |||||||||| || | |||||||| || || | || |||||| Sbjct 492 TCTAACTCTATCGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTTTAGACGAGTGG 551 Query 178116 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTCATTG--GTATCTATG 178173 || || ||||||||||||| |||||| |||||||| |||||| | | | ||| || || Sbjct 552 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCT-TG 610 Query 178174 CATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTG 178233 | |||||||||||||| ||||||||| ||||||||||| ||||| || ||||| | | Sbjct 611 C-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCG 669 Query 178234 TAGCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTC 178293 |||| | ||| ||||||||||| |||||||| ||||||||| | || || || |||| | Sbjct 670 TAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATCGGAC 729 Query 178294 AAGGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTG 178353 ||||| || ||||| | ||||| | || || |||||||| ||||||| |||| | | Sbjct 730 AAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAG 789 Query 178354 TTTTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTG 178413 | ||||||||||||||||||||||| |||||||| ||||| ||| ||||| || |||| Sbjct 790 TATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTG 849 >seq620 Length=282 Score = 194 bits (214), Expect = 2e-44 Identities = 215/284 (76%), Gaps = 6/284 (2%) Strand=Plus/Plus Query 178416 TTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGT 178475 || ||||| || | |||||||| |||||||||||| | || |||||| | | ||| Sbjct 2 TTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGT 61 Query 178476 GAAACGACTGAA-ACAGAATCACAG--AACTATGGTTATAAGTTCGGACAAGAAGAAGAG 178532 ||||| |||| || | | | | ||||| ||||| || ||||||||||||||||| Sbjct 62 GAAAC---TGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAA 118 Query 178533 ACATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCA 178592 || ||||||||||| || ||||| || ||||| || ||||| ||||||||||| || Sbjct 119 ACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGT 178 Query 178593 TTCAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGG 178652 ||||||||||| ||| | | ||||||||| | || || ||||| || || || |||||| Sbjct 179 TTCAACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGG 238 Query 178653 TTCACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGG 178696 || || || || || || || || |||||||| ||| | ||||| Sbjct 239 TTAACTGCTCTTGGTGTTAGTACTATGGCATTCAACTTAAATGG 282 >seq49 Length=2147 Score = 136 bits (150), Expect = 5e-27 Identities = 156/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 178668 GTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGA 178727 || || || |||||||| ||| | ||||| |||||||||||||| || | | || | Sbjct 2146 GTTAGTACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAGC 2087 Query 178728 CAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAA 178787 ||||| || || ||||||| ||||| ||| | |||||||||| | | | || |||||| Sbjct 2086 CAAGGCCGCGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAA 2027 Query 178788 GTCATGCACGAGCGCAACGCGCACAACTTCCCGCTTGATCTTGCAGCAGCTGA-GTCCAC 178846 || |||||||| || ||||||||||||||||| || ||| | || | | || | || | Sbjct 2026 GTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGATTTAGCCGTATCTAATGTTC-T 1968 Query 178847 ACCTGTGGCCTTAATTGCTCCTTCTGT 178873 ||||| || |||| |||||| |||| Sbjct 1967 TCCTGTTGCATTAAACGCTCCTGCTGT 1941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605829380320080