Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq566 533 2e-146 seq288 437 1e-117 seq620 188 8e-43 seq49 125 8e-24 >seq566 Length=2184 Score = 533 bits (590), Expect = 2e-146 Identities = 734/1021 (72%), Gaps = 4/1021 (0%) Strand=Plus/Plus Query 159899 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 159958 |||||| || |||| |||||| | ||||| ||||||||||| ||| |||| ||||| || Sbjct 592 TTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGC 651 Query 159959 CTTCTTCTTCTTCCCA-CTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTT 160017 ||| || || |||||| | || | |||||| |||| || ||| | || || || ||||| Sbjct 652 CTT-TTATTATTCCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTT 710 Query 160018 CGCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGG-TGCAAACTTTC 160076 | || |||||||| |||||| | || ||| || || || || ||||| ||| Sbjct 711 TGTTACATCTTGGTATACACATGGATTAGCATCTTCTTACCTAGAAGGATGCAA-CTTCT 769 Query 160077 TTACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGG 160136 | || | | || || || || || |||||||||||| | || | | |||| Sbjct 770 TAACTGTAGCGGTATCAACACCTGCAAACAGTATGGGTCATTCCTTAATTTTATTATGGG 829 Query 160137 GTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTG 160196 | ||||| || ||||| |||||| | ||| | ||| |||| ||| | ||| |||| Sbjct 830 GACCTGAAGCACAAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTA 889 Query 160197 TGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCAC 160256 | ||| | |||||||| || | ||||||||||| | ||||| || || | || | Sbjct 890 TCGCATTACATGGTGCATTTGGTTTAATTGGATTCTGTTTACGTCAATTCGAGATCGCTC 949 Query 160257 GTCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTTG 160316 |||| | ||||| ||||| || || || ||||| |||||||| |||||||| || || | Sbjct 950 GTCTTGTAGGTATTCGTCCATATAACGCAATTGCATTCTCTGGACCTATTGCGGTATTCG 1009 Query 160317 TCAGCGTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTG 160376 | |||||| | ||||| || | || || | |||||||| |||||||| |||| Sbjct 1010 TTTCTGTATTCTTAATCTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTG 1069 Query 160377 GGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTA 160436 |||| ||||| || || | ||| | || ||| | ||||| || || |||||||| |||| Sbjct 1070 GGGTTGCAGCTATTTTCCGCTTCTTATTATTCTTACAAGGTTTCCATAACTGGACACTTA 1129 Query 160437 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCC 160496 |||| |||||||||||||| || || || || |||| || ||| | | ||| || | Sbjct 1130 ACCCATTCCATATGATGGGCGTAGCAGGGATTTTAGGTGGTGCATTATTATCTGCAATTC 1189 Query 160497 ATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGG 160556 |||| | ||||||||| |||||||| | ||||||||| || ||||| || || | Sbjct 1190 ATGGAGCTACTGTAGAAAACACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTG 1249 Query 160557 CGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 160616 ||||| | ||||| |||||| |||||||| ||||| || || || | ||||||| Sbjct 1250 CGTTTACACCAACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAATAGATTCTGGT 1309 Query 160617 CGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTG 160676 | || || |||||| | || || |||||||| || |||||||| || |||||||| |||| Sbjct 1310 CTCAAATTTTCGGTGTAGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATTTG 1369 Query 160677 TGCCTGTTATGGGTCTTTGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTTC 160736 | || || | ||| | |||||| | |||| ||| | ||| | || | ||| | Sbjct 1370 TTCCAGTAACAGGTTTATGGACAAGTTCTTTTGGTATTGTAGGTTTAGCATTAAATTTAA 1429 Query 160737 GTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCAGAATTTGAGACCT 160796 | || ||||| ||||| |||||| || | ||||| ||||||||||||||||| || | Sbjct 1430 GAGCATACGACTTCGTATCTCAAGAACTTCGTGCAGCTGAAGATCCAGAATTTGAAACTT 1489 Query 160797 TCTACACCAAGAACATCCTACTGAATGAAGGACTACGTGCATGGTTAGCACCTGCCGACC 160856 ||||||| || || ||| || | || ||||| | | ||||| | || | |||| Sbjct 1490 TCTACACTAAAAATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAAGACC 1549 Query 160857 AACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 160916 |||| ||||| |||||| | |||||||| || ||| | || | || ||||||||||||| Sbjct 1550 AACCACATGAAAACTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAAT 1609 Query 160917 A 160917 | Sbjct 1610 A 1610 >seq288 Length=849 Score = 437 bits (484), Expect = 1e-117 Identities = 422/538 (78%), Gaps = 4/538 (1%) Strand=Plus/Plus Query 158406 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACC 158465 ||||| | || ||||||||||||| || | ||||| ||||| | || |||| || Sbjct 312 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCTACA 371 Query 158466 ATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAA 158525 | ||| |||||| |||| || ||||||| || || || || |||||||| ||||||||| Sbjct 372 AGCTGCTTCATCATCGCTTTTATCGCTGCACCTCCAGTTGATATCGACGGTATCCGTGAA 431 Query 158526 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCT 158585 || || ||||| ||||| | || || |||||||||||| ||||||||||| | || | Sbjct 432 CCAGTTGCTGGATCACTTTTATACGGAAACAACATCATCACTGGTGCAGTTATTCCTAGT 491 Query 158586 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGG 158645 || ||| | || ||| |||||||||| || | |||||||| || || | || |||||| Sbjct 492 TCTAACTCTATCGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTTTAGACGAGTGG 551 Query 158646 CTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCAT--CTATG 158703 || || ||||||||||||| |||||| ||||| || |||||| | | || | || || Sbjct 552 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCT-TG 610 Query 158704 CATATATGGGACGTGAATGGGAACTTTCATACCGCTTAGGTATGCGCCCCTGGATCTGTG 158763 | || ||||||||||||||||||||| ||||| ||||| ||||| || ||||| | | Sbjct 611 C-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCG 669 Query 158764 TAGCATATTCTGCACCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTC 158823 |||| | || || ||||| |||||||||||||| |||||| | || || || |||| | Sbjct 670 TAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATCGGAC 729 Query 158824 AAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTG 158883 ||||| ||||| |||| ||||||| | ||||| ||||||||||| |||| |||| | | Sbjct 730 AAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAG 789 Query 158884 TATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGG 158941 |||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| Sbjct 790 TATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGG 847 >seq620 Length=282 Score = 188 bits (208), Expect = 8e-43 Identities = 214/284 (75%), Gaps = 6/284 (2%) Strand=Plus/Plus Query 158946 TTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTCGT 159005 || ||||| ||| | ||| ||||||||| || ||| || || || | | ||| Sbjct 2 TTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGT 61 Query 159006 GAAACGACTGAA-ACAGAGTCACAG--AACTATGGTTACAAGTTCGGACAAGAAGAAGAA 159062 ||||| |||| || | || | | ||||| |||||||| |||||||||||||||||| Sbjct 62 GAAAC---TGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAA 118 Query 159063 ACATATAATATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCA 159122 || || || ||||| || || || |||||||| || ||||| |||||||||||||| Sbjct 119 ACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGT 178 Query 159123 TTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGG 159182 ||||||||||| ||| | || ||||||||| | ||||| ||||| ||||| || |||||| Sbjct 179 TTCAACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGG 238 Query 159183 TTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGG 159226 || || || ||||| || || |||||||||||| | || || Sbjct 239 TTAACTGCTCTTGGTGTTAGTACTATGGCATTCAACTTAAATGG 282 >seq49 Length=2147 Score = 125 bits (138), Expect = 8e-24 Identities = 119/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 159204 ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 159263 || |||||||||||| | || ||||||||||||||||| || | ||||| | || || Sbjct 2140 ACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAGCCAAGGC 2081 Query 159264 CGTGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATG 159323 || ||| | ||||| ||||| || | | |||||||| | | | ||||||||||| ||| Sbjct 2080 CGCGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATG 2021 Query 159324 CATGAGCGTAACGCACACAACTTCCCACTCGA 159355 || || |||||||| ||||||||||| || || Sbjct 2020 CACGAACGTAACGCGCACAACTTCCCTCTAGA 1989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552309301257280