Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq566 509 2e-139 seq288 437 1e-117 seq620 188 9e-43 seq49 125 9e-24 >seq566 Length=2184 Score = 509 bits (564), Expect = 2e-139 Identities = 716/1000 (72%), Gaps = 4/1000 (0%) Strand=Plus/Plus Query 180033 GACGACTGGCTTAAACGCGACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTCTT 180092 || |||||| | ||||| || || || |||||| | || ||||| || || || || || Sbjct 604 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGCCTTTTA-TTATT 662 Query 180093 CCCA-CTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTG 180151 |||| | || | |||||| |||| || ||| | || || || ||||||| || ||| Sbjct 663 CCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCTTG 722 Query 180152 GTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGCTG 180210 ||| || || || | || ||||| || || ||||| ||| ||||| | || | ||| | Sbjct 723 GTATACACATGGATTAGCATCTTCTTACCTAGAAGGATGC-AACTTCTTAACTGTAGCGG 781 Query 180211 TCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 180270 | || || ||||| || |||||||||||| | || || | ||||| ||||| | | Sbjct 782 TATCAACACCTGCAAACAGTATGGGTCATTCCTTAATTTTATTATGGGGACCTGAAGCAC 841 Query 180271 AGGGGAATTTCCAACGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACG 180330 | || ||||| || ||| ||| |||| ||| | ||| ||| | || | || | Sbjct 842 AAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATCGCATTACATG 901 Query 180331 GTGCCTTCGCCCTAATTGGATTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTA 180390 |||| || | |||||||||| |||| || || || | || |||||| | |||| Sbjct 902 GTGCATTTGGTTTAATTGGATTCTGTTTACGTCAATTCGAGATCGCTCGTCTTGTAGGTA 961 Query 180391 TCCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTC 180450 | ||||| || || || |||||||||||||| ||||| || ||||| || ||||| Sbjct 962 TTCGTCCATATAACGCAATTGCATTCTCTGGACCTATTGCGGTATTCGTTTCTGTATTCT 1021 Query 180451 TCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAA 180510 | ||||| || || || || | ||||||||||| ||||| ||||||||| ||||| | Sbjct 1022 TAATCTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGCTA 1081 Query 180511 TCTTTAGATTCCTACTCTTTCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATA 180570 | || | ||| || | || | || |||||||| |||||||| || ||||| ||||||| Sbjct 1082 TTTTCCGCTTCTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAACCCATTCCATA 1141 Query 180571 TGATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTG 180630 ||||||| || || || || ||||||| ||||| |||| ||||| ||||| | |||| Sbjct 1142 TGATGGGCGTAGCAGGGATTTTAGGTGGTGCATTATTATCTGCAATTCATGGAGCTACTG 1201 Query 180631 TGGAGAACACACTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAA 180690 | || |||||||| | ||||||||| || |||||||| || || ||| ||| Sbjct 1202 TAGAAAACACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTTTACACCAA 1261 Query 180691 CGCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCG 180750 | ||| || |||||||| || ||||| || || || | |||||||| || || |||| Sbjct 1262 CACAATCAGAAGAAACTTATTCAATGGTAACAGCGAATAGATTCTGGTCTCAAATTTTCG 1321 Query 180751 GTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGG 180810 || | || || |||||||| || |||||||| || |||||||| ||||| || || | | Sbjct 1322 GTGTAGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATTTGTTCCAGTAACAG 1381 Query 180811 GTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATT 180870 || |||||||| ||| |||| ||| | ||| | || | || | | || ||||| | Sbjct 1382 GTTTATGGACAAGTTCTTTTGGTATTGTAGGTTTAGCATTAAATTTAAGAGCATACGACT 1441 Query 180871 TCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGA 180930 |||| |||||| | | ||||| |||||||| || || || || |||||||| || | Sbjct 1442 TCGTATCTCAAGAACTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAA 1501 Query 180931 ACATCCTATTGAATGAAGGACTACGTGCATGGTTGGCACCTGCCGATCAACCACACGAAA 180990 | ||| |||| || ||||| | | ||||| |||| | || |||||||| |||| Sbjct 1502 ATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAAGACCAACCACATGAAA 1561 Query 180991 ACTTCATCTTCCCTGAAGAAGTTCTACCAAGAGGTAACGC 181030 |||| | ||||| || || ||| ||||| | || ||||| Sbjct 1562 ACTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGC 1601 >seq288 Length=849 Score = 437 bits (484), Expect = 1e-117 Identities = 440/572 (77%), Gaps = 0/572 (0%) Strand=Plus/Plus Query 178852 TGGGAACAGTTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTC 178911 ||||| | |||||| ||| | || ||| | || ||||| || | ||||||||| Sbjct 276 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 335 Query 178912 GGTGTGCTGATGATTCCTACGTTGCTTGCTGCAACTATCTGTTTCATCGTTGCTTTCGTA 178971 ||||| | ||||| || || || | | || || | ||| |||||| | ||||| | Sbjct 336 GGTGTTTTAATGATCCCAACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTTATC 395 Query 178972 GCAGCACCTCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTAT 179031 || |||||||| || ||||| ||||| ||||||||||| || ||||| ||||| | || Sbjct 396 GCTGCACCTCCAGTTGATATCGACGGTATCCGTGAACCAGTTGCTGGATCACTTTTATAC 455 Query 179032 GGAAACAACATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTC 179091 ||||||||||||||| ||||||| ||| | || ||||| ||| | || ||| | |||||| Sbjct 456 GGAAACAACATCATCACTGGTGCAGTTATTCCTAGTTCTAACTCTATCGGTATTCACTTC 515 Query 179092 TACCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAA 179151 ||||| | |||||||| || || | || |||||||| || ||||||||||||| |||| Sbjct 516 TACCCAGTTTGGGAAGCTGCGTCTTTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAA 575 Query 179152 CTGGTAGTCTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTT 179211 || ||||| || |||||| | | || | | ||| ||||||||||| ||||||||| Sbjct 576 CTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTT 635 Query 179212 TCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCT 179271 |||||| |||| |||||||| ||||| | || || | ||| || ||||| ||||| Sbjct 636 AGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCA 695 Query 179272 GCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCT 179331 || |||||||||| | || || || |||| |||||| |||||||||| ||||||| Sbjct 696 GCATCTGCAGTATTCTTAGTTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCT 755 Query 179332 CTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTT 179391 | ||||| ||||||||||| |||| |||| | ||||||||||||||||||||||| ||| Sbjct 756 TTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTT 815 Query 179392 ATGCACCCGTTCCATATGCTCGGTGTTGCTGG 179423 |||||||| ||||||||| ||||||||||| Sbjct 816 ATGCACCCATTCCATATGGCTGGTGTTGCTGG 847 >seq620 Length=282 Score = 188 bits (208), Expect = 9e-43 Identities = 216/285 (76%), Gaps = 8/285 (3%) Strand=Plus/Plus Query 179428 TTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTC-G 179486 || ||||| ||| | ||| |||||||||||| ||| || || || | | || || | Sbjct 2 TTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATC-TAGTTTAATCCG 60 Query 179487 TGAAACAACTGA-GACAGAGTCACAG--AACTATGGTTATAAGTTCGGACAAGAAGAAGA 179543 |||||| ||| ||| | || | | ||||| ||||| || ||||||||||||||||| Sbjct 61 TGAAAC---TGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGA 117 Query 179544 GACCTATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATC 179603 || || |||||||| || ||||| || ||||| || ||||| ||||||||||| || Sbjct 118 AACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAG 177 Query 179604 CTTTAACAACTCACGCTCTTTGCACTTCTTCCTTGCTGCGTGGCCGGTTGTCGGCATCTG 179663 || |||||||| || |||| ||||||||| | ||||| ||||| ||||| || ||||| Sbjct 178 TTTCAACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTG 237 Query 179664 GTTCACTGCTCTTGGCGTGTCAACCATGGCGTTCAACCTCAACGG 179708 ||| ||||||||||| || || ||||| |||||| | || || Sbjct 238 GTTAACTGCTCTTGGTGTTAGTACTATGGCATTCAACTTAAATGG 282 >seq49 Length=2147 Score = 125 bits (138), Expect = 9e-24 Identities = 119/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 179686 ACCATGGCGTTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGA 179745 || ||||| |||||| | || ||||||||||||||||| || | |||| | ||||| Sbjct 2140 ACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAGCCAAGGC 2081 Query 179746 CGTGTCCTTAACACATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATG 179805 || || | ||||| ||||| ||| | | |||||||| | ||| ||||||||||| ||| Sbjct 2080 CGCGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATG 2021 Query 179806 CATGAGCGTAACGCACACAACTTCCCACTCGA 179837 || || |||||||| ||||||||||| || || Sbjct 2020 CACGAACGTAACGCGCACAACTTCCCTCTAGA 1989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610148095606080