Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq17508 138 2e-27 >seq17508 Length=3941 Score = 138 bits (152), Expect = 2e-27 Identities = 602/942 (64%), Gaps = 14/942 (1%) Strand=Plus/Minus Query 69253 ATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTT 69312 || |||||| || ||| | || || || | |||||| || || ||||| | | | Sbjct 2991 ATCACAAACTTAGGCAGGACGACCGAAGCCAAATTACACACAGCCACCTCCTCCGGGCTC 2932 Query 69313 GCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGA 69372 | ||| || || ||||| ||||| | || || || ||||| ||||| ||||| Sbjct 2931 GTATACTGGATAATCTCCGTACACAAGTTCGAACTGCGAATCGTCCCTAGATTCTGCTGG 2872 Query 69373 TTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGA 69432 |||||||| ||||| ||||| || ||||| ||| |||| || || || || ||||| Sbjct 2871 TTACTCTTCAGATTACACGCGTCTTTATAAAGCATATACGGCGTGCCCGTCTCGATCTGT 2812 Query 69433 GATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTA-ACGCTTCTC 69491 || || | ||| | ||| | | | ||| | |||| || | || |||| | Sbjct 2811 GAGTCCAAAATCGCGAACCACAGGTCTTGCGCACGCA---CGGTTTTCTTGACTCTTCCC 2755 Query 69492 --TTTTTCATATTGT--GTATATAGCCGTTCGAATTCATCTCCCCAAACA-TCATCCAAT 69546 |||||||||||| ||| | ||| ||||| | | | || || || |||| Sbjct 2754 GCTTTTTCATATTGCAGGTACAGGGCC--TCGAACGCCT-TGCCATGGCAGTCGCCCAAG 2698 Query 69547 CCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATA 69606 ||||| |||| || ||||||||||| |||||||| |||| |||| || | |||||| Sbjct 2697 CCAGGGCATTGATCGGGACACATCAACGACCACACCCCATCCTCCTCCACCCTCTTCATA 2638 Query 69607 AATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCC 69665 || | ||| || ||||| || | ||| || ||||| | | | ||||| || || Sbjct 2637 AACAAATCAGGGATCCACAG-CCCATAGAACAGATCACGCGCCCGCGCCTCTTCCTTCCC 2579 Query 69666 TGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 69725 |||||| | | || || | ||| | |||||| | |||||| || || | || || Sbjct 2578 ATGATTTTTCCTCAAGTCAAGCACCTCAAAAATATCCGCATGCCACGGCTCAATGTAAAT 2519 Query 69726 CGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATA 69785 ||| | | | ||||| || || || |||||||| | |||| || || | | | Sbjct 2518 CGCAAAGGCCCCCGGCCGCTTCCCCCCGCCCTGATCAACATATCGCGCCGTCACGTCAAA 2459 Query 69786 GACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCC 69845 || | ||||||||| | | |||||| | || || || || ||||| ||| Sbjct 2458 CACACGCAGCATCGGCACTAAACCATTGCTCGTCCCCTTCGTCCCCTTGATATAGGCTCC 2399 Query 69846 TCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGC 69905 ||||||||||| | || | ||| || || || || ||| || | || Sbjct 2398 GTGCGCGCGAATATTGTGCACCGACAAACCAATCCCACCCGCTGCCTTACTAATCACCGC 2339 Query 69906 ACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAA 69965 || | ||||| || ||||| || ||| | || ||| ||| | | ||||| Sbjct 2338 GCACTGCTTCAACGTATCATAAATCCCCACAATCGAATCCGACTGCATCGTCAACAGAAA 2279 Query 69966 ACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGT 70025 ||| |||||| || | || || |||| || || ||||| || ||||| | Sbjct 2278 ACACGAAGACATCTGGGGGAAACGCGTCCCGGCATGGAACAAGGTAGGCGACGCGTGGAT 2219 Query 70026 GAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATG 70085 ||||| || | | | || | || || || | || | |||| ||| | ||| Sbjct 2218 AAACCACTTATTACTCATCAATTCATACGTCTCCAATGCCGCCTCTAAGTCCTTCCCATG 2159 Query 70086 AATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTAT 70145 || || | ||| || ||||||| ||| | ||| || ||||| ||| || || | Sbjct 2158 TATCCCCAACGCCACCCGCATCACCATGTACTGCGGGCGTTCCACCACCTTCTTCCCCAG 2099 Query 70146 TTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATA 70187 ||||| || || || |||| || || ||||||||||| Sbjct 2098 CTTCAAGAGATAAGAACGCTCCATCGTCTTGAACCCAAAATA 2057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686704521909240