Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_027991.1 Length=147303 Score E Sequences producing significant alignments: (Bits) Value seq18923 98.7 9e-16 >seq18923 Length=6009 Score = 98.7 bits (108), Expect = 9e-16 Identities = 165/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 58103 GGCTGTAAAGCGGGGCTGGTATTCAACCCGGCAACGCCGCTCAGTTATCTCGATTACGTC 58162 ||||| || || || ||||| |||||||| || || || ||| | | ||||| Sbjct 4667 GGCTGCAAGGCCGGCCTGGTCTTCAACCCCGCCACCCCCCTCTCCATGGCCAAGCACGTC 4726 Query 58163 ATGGACAAACTGGATGTGATCCTGCTGATGTCCGTGAACCCAGGCTTCGGCGGCCAGTCT 58222 ||||||| | || | ||||| || |||||||||||||| |||||||| || ||||| Sbjct 4727 TTGGACAAGATCGACATCATCCTCCTCATGTCCGTGAACCCCGGCTTCGGTGGGCAGTCC 4786 Query 58223 TTTATTCCGCAGACGCTGGATAAACTGCGCGAAGTGCGTCGCCGCATTGATGCGTCCGGT 58282 || || || |||| || | || || || || | || || || | ||||| Sbjct 4787 TTCATCCCCGAGACCCTCGTCAAGCTCCGTGAGGCCCGCAAGATGATCGACGAATCCGGC 4846 Query 58283 TACGACATTCGCCTGGAAGTGGACGGCGGCGTGAAGGTGAACAATATCGGCGAGATCGC 58341 || ||||| |||||||| || || ||||| ||| ||| ||| ||| |||||||| Sbjct 4847 TATGACATCCGCCTGGAGGTCGATGGCGGGGTGGGTGTGGCCAACATCAAGGAGATCGC 4905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471101458638680