Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq7782 197 2e-45 seq17508 129 7e-25 seq673 111 2e-19 >seq7782 Length=16676 Score = 197 bits (218), Expect = 2e-45 Identities = 588/899 (65%), Gaps = 15/899 (2%) Strand=Plus/Minus Query 111278 GTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 111337 |||||||| | || || || || | |||||| ||| ||| ||||| ||||| ||| Sbjct 7117 GTGTACTCGATGATCTCCGTGCAAAGGTTGGAGGACTTGATCACCCCCAGATTCTGCTGG 7058 Query 111338 TTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 111397 || ||| |||||| || ||||| | |||||||||||||| ||||||||| ||| Sbjct 7057 TTCGACTTGAGGTTGCAAGCGTCCTTAAACAGCATGTAGGGCGTGCCCGTCTCCACCTGG 6998 Query 111398 GATTTGAGAATAGCCTTCCAAACATCGGCGGC--TGGTACAATGGCGTTGGCCCGTCCCT 111455 || | | | || ||| | | ||| || | | |||| || |||| Sbjct 6997 GAGTCCAACACGGCGAACCACAGCTGTTGGGCCTTGATCACCTTGCGTG---CCTTCCCG 6941 Query 111456 C-CGCCTCGTACTTTGTGTAGAGG-GCTTCAAACTCCTCACCCACCGCGTCGGAGAGACC 111513 | | ||||||| |||||| |||| || |||||| || | |||| | | || Sbjct 6940 CTCTTCTCGTACGACTCGTAGAGCTGCTTGAA-CTCCTCCCCGCACACGTCCGCCAAGCC 6882 Query 111514 TGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAA 111573 || || | || || || || ||||| | ||| | | ||| || |||| |||||| Sbjct 6881 GGGGCACTCATTGGGGCAAAACAGGGACCAGTCACCGTCGTTCTCCACGCGCTGCATGAA 6822 Query 111574 AAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTG 111633 | || || |||| |||| |||| || || | || || |||| || || Sbjct 6821 CAAATCAGGCGTCCAGAGGGCATAAAACAGGTCACGGGCTCGCTCCAGCTCGTTGCCGTG 6762 Query 111634 GTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC 111693 || || | ||||||||||| | ||| || |||||||| ||||| || || | || Sbjct 6761 ATTCTTGCGCAGGTCAAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAAATGGC 6702 Query 111694 GATAGATCCCTTTCGA---CGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATAC 111750 || || ||||| || | ||| | || | || ||||| || ||| |||| || || Sbjct 6701 GAAGGAGCCCTTGCGCTTTCCCCCCCCCTGGTCCACGTAGCGGGCCGTGTCGTTGAAGAC 6642 Query 111751 GCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATT 111810 || ||||| || | ||||| | || ||| || | || || || || | | Sbjct 6641 ACGCAGCATGGGCACGATACCGTTGGAGGTACCGTTCGAGCCGCGGATGTAGGAGTCACG 6582 Query 111811 GGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACA 111870 ||| | | | |||||| || || || || || || | || ||||| || || Sbjct 6581 GGCGCGGATGTTGTGGATGGACACGCCGATCCCGCCGGCGAATTTGGAGATGGCGGCGCA 6522 Query 111871 CTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCA 111930 | | | || || | ||||| || | ||| ||||||||||| ||| || |||||||| Sbjct 6521 TTGCTTGAGGGTGTCGTAGATGCCATCGATGGAGTCCTCCTTCATGGTGAGGAGGAAGCA 6462 Query 111931 ACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA 111990 ||| | |||||| | || || || || ||||| ||||| || || || || |||| Sbjct 6461 GGAGGATAGCTGCGGGCGGGGGGTGCCGGCGTTGAAAAGGGTGGGAGTGGCATGCGTGAA 6402 Query 111991 CATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGAT 112050 | ||||||||| || || ||||| | | | | || | ||| ||| |||||| Sbjct 6401 GAGCTTTTGGGACATGAGGTTATAGGTCTCGATGGCGGCGTCGACGTCCTCCTTGTGGAT 6342 Query 112051 GCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCG 112110 |||||| || || ||||||| ||||| ||| ||| ||||||| |||||| || | | Sbjct 6341 GCCGATGGCCACGCGCATGATCATGTGCTGGGGGCGCTCCATGACGATGCCGTCCATC-- 6284 Query 112111 TTGA--AGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 |||| || ||| |||||| ||||| |||| || ||||| | | || ||||||| Sbjct 6283 TTGAGCAGGTAGGACTTCTCCAGGGTCTTGAAGCCGAAGTAGTCGTAGTCGAAGTCCCG 6225 >seq17508 Length=3941 Score = 129 bits (142), Expect = 7e-25 Identities = 367/558 (66%), Gaps = 7/558 (1%) Strand=Plus/Minus Query 111221 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 111280 ||| |||| || ||| ||| || |||||||| || |||||| ||| ||| || Sbjct 2988 ACAAACTTAGGCAGGACGACCGAAGCCAAATTACACACAGCCACCTCCTCCGGGCTCGTA 2929 Query 111281 TACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 111340 |||| | ||| || ||||| ||||| ||||| ||||||||| | ||||| |||||| Sbjct 2928 TACTGGATAATCTCCGTACACAAGTTCGAACTGCGAATCGTCCCTAGATTCTGCTGGTTA 2869 Query 111341 CTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGAT 111400 |||||| || ||||| || || || ||||| || ||||| |||||||| ||||||| Sbjct 2868 CTCTTCAGATTACACGCGTCTTTATAAAGCATATACGGCGTGCCCGTCTCGATCTGTGAG 2809 Query 111401 TTGAGAATAGCCTTCCAAACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCC 111460 | | ||| || ||| | || || | || | ||| | | |||| | Sbjct 2808 TCCAAAATCGCGAACCACAGGTCTTGCGCACGCACGGTTTTCTTGACTCTTCCCGCTTTT 2749 Query 111461 TCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGC 111519 || || | ||| ||||| || ||| ||| ||| || |||| | || || || Sbjct 2748 TCATATTGCAGGTACAGGGCCTCGAACGCCT-TGCCATGGCAGTCGCCCAAGCCAGG-GC 2691 Query 111520 CTTG-TCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGT 111578 ||| || ||||| | | ||||| ||| | ||||| |||| |||||| || | | Sbjct 2690 ATTGATCGGGACACATCAACGACCACACCCCATCCTCCTCCACCCTCTTCATAAACAAAT 2631 Query 111579 CTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGA 111638 | || |||||||| | || ||||| | ||| |||||||| | || || || Sbjct 2630 CAGGGATCCACAGCCCATAGAACAGATCACGCGCCCGCGCCTCTTCCTTCCCATGATTTT 2571 Query 111639 GTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAG 111698 | || ||||| | ||| | |||||||| ||||| ||||||| || | || | | Sbjct 2570 TCCTCAAGTCAAGCACCTCAAAAATATCCGCATGCCACGGCTCAATGTAAATCGCAAAGG 2511 Query 111699 ATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAA 111755 ||| || | ||| | |||| ||||| ||||| || ||| ||| || || | Sbjct 2510 CCCCCGGCCGCTTCCCCCCGCCCTGATCAACATATCGCGCCGTCACGTCAAACACACGCA 2451 Query 111756 GCATTGGAATAATACCAT 111773 |||| || | | ||||| Sbjct 2450 GCATCGGCACTAAACCAT 2433 >seq673 Length=1750 Score = 111 bits (122), Expect = 2e-19 Identities = 320/493 (65%), Gaps = 12/493 (2%) Strand=Plus/Minus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 ||||||||| ||||| | | | ||| ||| | || || || || || || || || Sbjct 971 ATCAAAACGGCCCGGTCTTAATAAAGCGGAATCTAAAATGTCTACACGGTTTGTAGCTGC 912 Query 11512 AATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAAT 11571 ||| || | || || | | | | ||||| ||||||||||| || | | || || | Sbjct 911 AATCACGATAACACCGTTGTTAGTTTCAAACCCATCCATCTCAGTTAAAAGCTGGTTTAA 852 Query 11572 TGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTG------CGTTGCTTGCC 11625 |||||||||| || ||||| | ||||||| | | | | ||| || Sbjct 851 AGTTTGTTCTCGTTCGTCATTACC------ACCACCAACGCCGGATCCTCTTTGTCGACC 798 Query 11626 CACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAA 11685 || |||||||| ||||||||||||| |||||| ||| ||| | ||| ||| || Sbjct 797 AACTGCATCAATTTCATCAATGAAGATAATACAAGGTGTTTTTGCTTTGGCTCTTTTGAA 738 Query 11686 GAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGA 11745 ||||| |||| ||| ||||| | ||||||||| | || ||||| | || || || Sbjct 737 AAGATCACGAATTCTTGATGCACCTATACCAACAAATAATTCTACAAATTCTGATGCTGA 678 Query 11746 GCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCC 11805 ||| | ||| || || |||| ||||||||||| || || | | || || || Sbjct 677 GCAACTAAAGAAAGGAACTTTTGCCTCACCCGCGATAGCCTTAGCTAATAAAGTTTTACC 618 Query 11806 CGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATA 11865 || ||||| ||| | | ||| | ||| || || || |||||| | ||| Sbjct 617 TGTCCCTGGAGGACCTGATAATAGGACACCTTTTGGAATTTTTGCACCAACACGTGTATA 558 Query 11866 TCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAAT 11925 | || |||| ||| | ||| ||||| |||| || || ||||| | | || || Sbjct 557 ACGTTCAGGTTTCTTTAAGAAAGTAACAATTTCTTGAAACTCTTCTTTAACTTCATCGAT 498 Query 11926 CCCCTCAACATCA 11938 || |||||||| Sbjct 497 ACCAGCAACATCA 485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627845231133600