Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq7782 203 4e-47 seq2632 147 3e-30 seq17508 125 9e-24 seq13862 111 2e-19 seq673 89.7 6e-13 >seq7782 Length=16676 Score = 203 bits (224), Expect = 4e-47 Identities = 594/903 (66%), Gaps = 23/903 (3%) Strand=Plus/Minus Query 118752 GTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 118811 |||||||| || || |||||||| | ||| || ||| || |||| |||| || Sbjct 7117 GTGTACTCGATGATCTCCGTGCAAAGGTTGGAGGACTTGATCACCCCCAGATTCTGCTGG 7058 Query 118812 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 118871 || ||||| ||| || || ||||| | |||||||| ||||| ||||||||| ||| Sbjct 7057 TTCGACTTGAGGTTGCAAGCGTCCTTAAACAGCATGTAGGGCGTGCCCGTCTCCACCTGG 6998 Query 118872 GACTTGAGAATAGCCTTCCAGACATC---GGCAGCTGGCACAG-TGGCGTTGGCTCGCCC 118927 || | | | || ||| | | ||| || | || | |||| | || || Sbjct 6997 GAGTCCAACACGGCGAACCACAGCTGTTGGGC--CTTGATCACCTTGCGT-GCCTTCCCG 6941 Query 118928 CTCTTCCTCGTACTTTGTGTAGAGG-GCTTCAAACTCTTCACC---CACGGCCTCTGAGA 118983 |||||| |||||| |||||| |||| || ||| || || |||| || | || Sbjct 6940 CTCTTC-TCGTACGACTCGTAGAGCTGCTTGAA-CTCCTCCCCGCACACGTCCGCCAAG- 6884 Query 118984 GCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCA 119043 || || || || ||||| || || ||||| | ||| | | ||| || |||| || Sbjct 6883 --CCGGGGCACTCATTGGGGCAAAACAGGGACCAGTCACCGTCGTTCTCCACGCGCTGCA 6826 Query 119044 TGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCT--TCATC 119101 |||| | || || ||||||| || | || || || || || ||| | || | Sbjct 6825 TGAACAAATCAGGCGTCCAGAGGGCATAAAACAGGTCACGG--GCTCGCTCCAGCTCGTT 6768 Query 119102 CCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTA 119161 || ||||| |||| || | || || | ||| || ||||||||||| || ||||| Sbjct 6767 GCCGTGATTCTTGCGCAGGTCAAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTA 6708 Query 119162 CACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTT 119218 | |||| || ||||| || | || |||||| || || | || ||| |||| Sbjct 6707 AATGGCGAAGGAGCCCTTGCGCTTTCCCCCCCCCTGGTCCACGTAGCGGGCCGTGTCGTT 6648 Query 119219 AAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGA 119278 || ||||| ||||| || | |||||| | ||| || || | || || || || Sbjct 6647 GAAGACACGCAGCATGGGCACGATACCGTTGGAGGTACCGTTCGAGCCGCGGATGTAGGA 6588 Query 119279 CTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTG 119338 | | ||| | || | ||||||| || || || || || || | || ||||| Sbjct 6587 GTCACGGGCGCGGATGTTGTGGATGGACACGCCGATCCCGCCGGCGAATTTGGAGATGGC 6528 Query 119339 CGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAG 119398 ||||| | | |||| || ||||||| |||||||| ||||| |||| | | || ||| Sbjct 6527 GGCGCATTGCTTGAGGGTGTCGTAGATGCCATCGATGGAGTCCTCCTTCATGGTGAGGAG 6468 Query 119399 GAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTG 119458 ||||||| || | || || | ||| || || |||||||| || || || || || || Sbjct 6467 GAAGCAGGAGGATAGCTGCGGGCGGGGGGTGCCGGCGTTGAAAAGGGTGGGAGTGGCATG 6408 Query 119459 GATGAACATACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCC 119518 |||| | ||||||||| || |||||||| | | ||||| | ||| ||| Sbjct 6407 CGTGAAGAGCTTTTGGGACATGAGGTTATAGGTCTCGATGGCGGCGTCGACGTCCTCCTT 6348 Query 119519 GTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATC 119578 ||| || ||||| | || ||||| | ||||| ||||| ||||| | ||| || || Sbjct 6347 GTGGATGCCGATGGCCACGCGCATGATCATGTGCTGGGGGCGCTCCATGACGATGCCGTC 6288 Query 119579 GAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAATCGTAGTC 119638 | | | | ||||| |||||||| |||||||| || || ||| | | ||| |||| Sbjct 6287 CATCTTGAGCAGGTAGGACTTCTCCAGGGTCTTGAAGCCGAAGTAGTCGTAGTCGAAGTC 6228 Query 119639 CCG 119641 ||| Sbjct 6227 CCG 6225 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 |||||||||||| ||||||| | || ||||||||||| || |||||||||| Sbjct 8082 TGAACTGAATGGCATCGGCCTTGGGGCGGGTGCGAAGGTAGTACATGCCGGTCTTGAGCC 8023 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924 ||| |||||||| || | ||||| |||| | || || | | || || | ||| | Sbjct 8022 CCTTCTTCCAGGAGTAGAAGTGCATGGAGGTGAGCTGGGCGGGCGTGGGGTTGGCCAGGT 7963 Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984 || ||| | ||||| || |||| || || || || |||||||| || || | Sbjct 7962 GGATGTTGAGGGACTGGGACTGGCAGATGTAGGCGCCGCGGTCGGCCGCCATGTCGATGA 7903 Query 117985 CATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTT 118027 | |||| | ||| |||||||| ||| ||||||| | ||| Sbjct 7902 CGCACTTCTGCCGGATCTCCCACACGGTCTTGTAGAGCTCCTT 7860 >seq2632 Length=5999 Score = 147 bits (162), Expect = 3e-30 Identities = 296/435 (68%), Gaps = 18/435 (4%) Strand=Plus/Plus Query 14041 GGGTAGGGACACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAG 14100 ||| ||| |||||||| ||||| || || || || ||||||||||| | || || Sbjct 4359 GGGCAGGTCCACGGTGACGCGGCGATCGAAACGGCCGGGACGGAGGAGGGCCTGATCCAG 4418 Query 14101 GATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATC 14160 || ||| |||||| || || |||||||| | |||||| | | | || ||||| || Sbjct 4419 GACGTCAGCGCGGTTGGTGGCGGCGATGACGATGATGCCGGGGTTGCCCTCGAAGCCGTC 4478 Query 14161 CATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCAGGCATACCA 14218 ||| || |||| || ||||| | ||| || || || || || || ||| || | | Sbjct 4479 CATTTCCGTCAGCAGCTGATTCAAGGTCTGCTCACGCTCGTCGTTTCCGCCCGCGAA--A 4536 Query 14219 CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGG-TTG 14277 ||||||| || || ||| || ||||| || ||||||||||||| ||| || || | Sbjct 4537 CCCGCACCACGCTGGCGACCCACCGCGTCGATCTCATCGATGAAAATGATGCAAGGCGCG 4596 Query 14278 ATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACAT 14337 | ||| || | | || || || || ||||| | | ||||| |||||||||||||| Sbjct 4597 TTCTTCTTGGCCTGC-TCGAACATGTCACGCACACGCGACGCACCCACACCCACAAACAT 4655 Query 14338 CTCCACAAAAT------TGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGC 14391 |||||| || | ||| |||||| ||||| || || ||| ||||| || Sbjct 4656 CTCCACGAACTCGGACCCGGCCGCGGAA------ATGAAAGGCACACCAGACTCACCTGC 4709 Query 14392 GATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACG 14451 | ||| ||| || || ||||| || || || || ||| | || | |||| || Sbjct 4710 CACGGCCTTGGCCAGCAGCGTCTTACCGGTACCGGGGGGCCCGTCCAGGATCACACCGCG 4769 Query 14452 TGGGATCCTGGCACC 14466 || ||| ||||||| Sbjct 4770 AGGAATCTTGGCACC 4784 >seq17508 Length=3941 Score = 125 bits (138), Expect = 9e-24 Identities = 366/558 (66%), Gaps = 7/558 (1%) Strand=Plus/Minus Query 118695 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 118754 ||| ||||||| ||| ||| || |||| ||||||||||| ||| ||| || Sbjct 2988 ACAAACTTAGGCAGGACGACCGAAGCCAAATTACACACAGCCACCTCCTCCGGGCTCGTA 2929 Query 118755 TACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 118814 |||| ||||| ||||| |||||||| ||||| ||| || || | |||| || || Sbjct 2928 TACTGGATAATCTCCGTACACAAGTTCGAACTGCGAATCGTCCCTAGATTCTGCTGGTTA 2869 Query 118815 GACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGAC 118874 ||| |||||||| || || |||||||| || ||||| |||||||| | || || Sbjct 2868 CTCTTCAGATTACACGCGTCTTTATAAAGCATATACGGCGTGCCCGTCTCGATCTGTGAG 2809 Query 118875 TTGAGAATAGCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCC 118934 | | ||| || ||| | || || |||| || ||| ||| ||| ||| Sbjct 2808 TCCAAAATCGCGAACCACAGGTCTTGCGCACGCACGGTTTTCTTGACTCTTCCCGCTTTT 2749 Query 118935 TCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGC-CTCTGAGAGCCCTGGTGC 118993 || || | ||| ||||| || ||| | | ||| ||| || | || || || Sbjct 2748 TCATATTGCAGGTACAGGGCCTCGAACGCCT-TGCCATGGCAGTCGCCCAAGCCAGG-GC 2691 Query 118994 CTT-ATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGT 119052 || ||| || || | | ||||| ||| ||||||| |||| |||||| || | | Sbjct 2690 ATTGATCGGGACACATCAACGACCACACCCCATCCTCCTCCACCCTCTTCATAAACAAAT 2631 Query 119053 CTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGA 119112 | |||||||| ||| | |||| ||||| || || || ||||| | ||| ||||| Sbjct 2630 CAGGGATCCACAGCCCATAGAACAGATCACGCGCCCGCGCCTCTTCCTTCCCATGATTTT 2571 Query 119113 GACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG 119172 | ||| || | | || | |||||||| |||||||| || | ||| | ||| | | Sbjct 2570 TCCTCAAGTCAAGCACCTCAAAAATATCCGCATGCCACGGCTCAATGTAAATCGCAAAGG 2511 Query 119173 ACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAA 119229 |||| || | || |||| | ||||| | ||| || ||| ||| ||||| | Sbjct 2510 CCCCCGGCCGCTTCCCCCCGCCCTGATCAACATATCGCGCCGTCACGTCAAACACACGCA 2451 Query 119230 GCATTGGAATGATACCAT 119247 |||| || | | ||||| Sbjct 2450 GCATCGGCACTAAACCAT 2433 Score = 89.7 bits (98), Expect = 6e-13 Identities = 217/325 (67%), Gaps = 4/325 (1%) Strand=Plus/Minus Query 117960 CCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAG 118019 ||||||||||||||||| ||||||| ||| |||||| |||||||| ||||| || Sbjct 3843 CCCCGATCCGCCGCCATGTCAATCAACGACTTTTGCTTGATCTCCCACACCGTCCTATAA 3784 Query 118020 AGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACC 118079 | | ||| | || | |||| || | | || | || || ||| || ||| Sbjct 3783 ATCTCCTTCAACTCCTGCGGGAGCCCCGGCACACGCTGCACCGACCCTCCCTCCGCCACC 3724 Query 118080 ATGAGATCCTTCATA-TCCTT-TGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGAT 118137 | || | | | | || || ||| || ||| | | ||||| | || | || Sbjct 3723 ACTGCAT--TGCGGACTGCTGGTGTCCATAGGCCACGCGCCGTCAGATCTTGCAATAAAT 3666 Query 118138 GCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGT 118197 || |||||| |||| |||||| ||||| || | | ||| | ||||| || | Sbjct 3665 GCGGATTGACGACAATAAACTCCCCCGCCTTCACTCGACGCGAATACAAATTGGAGGTAT 3606 Query 118198 ATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTG 118257 | ||||||| |||||| || | ||||| || || || |||||||| ||||||||||| | Sbjct 3605 AAGGCTCAATGCACTCGTTATACCCCAAAATCTGCGCCGTGGAGGCCGTGGGCATGGGCG 3546 Query 118258 CCATGAGAAGGCTGTTACGGAGACC 118282 | | |||||| ||| ||||| || Sbjct 3545 CGAGGAGAAGAGAGTTCCGGAGCCC 3521 >seq13862 Length=727 Score = 111 bits (122), Expect = 2e-19 Identities = 161/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| | |||| |||||||||||||||||| | ||||| |||||| |||||||||| Sbjct 328 GGCATCAACCCCCTCTTCTTCAACCAGAAAATAGAGCAAAACGAGCCACTGAAGAAGATC 387 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAAC 130195 ||||| || ||| || |||| || |||||||| |||||| |||| | ||| || Sbjct 388 CCCTCGACGGCCGCAAAGGCAATCAGCCGCTCAGCGAAGGAGGCATACTTCCTGTCACAC 447 Query 130196 CACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAG 130255 ||| | |||||||||||||| || ||| ||||| || | ||| || | | | Sbjct 448 CACCGGAGGGCCCACTGCGCCTTGCGTCGGACACAGGGGACCGTGTCGATAGCATTGAGG 507 Query 130256 AGTTCCTTCTTTTC-TGATGGATCTTTGATGTACTTATCTATGAG 130299 || | | ||| || || | || |||||||| | || ||||| Sbjct 508 AGCTTGTGCTTCTCTTGCCCGTTC-TTGATGTAGGTGTCGATGAG 551 >seq673 Length=1750 Score = 89.7 bits (98), Expect = 6e-13 Identities = 263/403 (65%), Gaps = 2/403 (0%) Strand=Plus/Minus Query 14150 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA 14209 ||||| |||||||||||||| || || || || | |||||||| ||||| ||||| || Sbjct 886 TCAAACCCATCCATCTCAGTTAAAAGCTGGTTTAAAGTTTGTTCTCGTTCGTCATTACCA 827 Query 14210 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | | || | | | ||| ||| || || ||||||||||| ||||| | ||| Sbjct 826 CCACCAACGCCGGATCCTCTTTGTCGACCAACTGCATCAATTTCATCAATGAAGATAATA 767 Query 14270 CATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 14329 || ||| ||| | ||| || || | ||| || | ||| ||||| | ||| Sbjct 766 CAAGGTGTTTTTGCTTTGGCTCTTTTGAAAAGATCACGAATTCTTGATGCACCTATACCA 707 Query 14330 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCC 14389 ||||| | || ||||| | | || || || | ||| || || || | |||||| Sbjct 706 ACAAATAATTCTACAAATTCTGATGCTGAGCAACTAAAGAAAGGAACTTTTGCCTCACCC 647 Query 14390 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCA 14449 ||||| || || | | || || || |||||||| |||| | ||| |||| Sbjct 646 GCGATAGCCTTAGCTAATAAAGTTTTACCTGTCCCTGGAGGACCTGATAATAGGACACCT 587 Query 14450 CGTGGGATCCTGGCACCACTGCCAAAGTAGCGTTCAGG-TTGTTTAAGGAAGTCCACGAT 14508 ||| || | |||||| | || |||||||| || |||||| |||| || || Sbjct 586 TTTGGAATTTTTGCACCAACACGTGTATAACGTTCAGGTTTCTTTAAGAAAGT-AACAAT 528 Query 14509 TTCTTCCAATTCATCCTTCGCGGCGTCGATGCCTTCAACGTCA 14551 ||||| || || || || | | ||||| || |||| ||| Sbjct 527 TTCTTGAAACTCTTCTTTAACTTCATCGATACCAGCAACATCA 485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618251285101960