Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq7782 170 2e-37 seq2632 118 1e-21 >seq7782 Length=16676 Score = 170 bits (188), Expect = 2e-37 Identities = 425/643 (66%), Gaps = 7/643 (1%) Strand=Plus/Plus Query 104141 GACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT--TCAACGGC 104198 |||| ||||| | || || || |||| ||||| |||||| ||| || |||| | Sbjct 6228 GACTTCGACTACGACTACTTCGGCTTCAAGACCCTGGAGAAGTCCTACCTGCTCAA--GA 6285 Query 104199 TCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTC 104258 | || || || | ||||| ||| ||| ||||| ||||||||||||||||||| || | Sbjct 6286 TGGACGGCATCGTCATGGAGCGCCCCCAGCACATGATCATGCGCGTGGCCATCGGCATCC 6345 Query 104259 ATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCA 104318 | ||| ||| | || | | | | ||||| || || ||||||||| | |||| Sbjct 6346 ACAAGGAGGACGTCGACGCCGCCATCGAGACCTATAACCTCATGTCCCAAAAGCTCTTCA 6405 Query 104319 TTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCT 104378 || || || || ||||| ||||| || || || || | || || | ||| |||| Sbjct 6406 CGCATGCCACTCCCACCCTTTTCAACGCCGGCACCCCCCGCCCGCAGCTATCCTCCTGCT 6465 Query 104379 TCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTG 104438 |||| || ||| ||||||||||| ||| | || ||||| | || || | | | || | Sbjct 6466 TCCTCCTCACCATGAAGGAGGACTCCATCGATGGCATCTACGACACCCTCAAGCAATGCG 6525 Query 104439 CGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATA 104498 | ||||| || | || || || || || || |||||| | | | ||| | Sbjct 6526 CCGCCATCTCCAAATTCGCCGGCGGGATCGGCGTGTCCATCCACAACATCCGCGCCCGTG 6585 Query 104499 AATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTAT 104558 | || || || || | || ||| || | ||||| | || ||||| || || | Sbjct 6586 ACTCCTACATCCGCGGCTCGAACGGTACCTCCAACGGTATCGTGCCCATGCTGCGTGTCT 6645 Query 104559 TTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCG---TCGAAAGGGATCTATCGCAG 104615 | |||| ||| || ||||| || | || | ||| | || ||||| || |||| Sbjct 6646 TCAACGACACGGCCCGCTACGTGGACCAGGGGGGGGGAAAGCGCAAGGGCTCCTTCGCCA 6705 Query 104616 TCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAG 104675 | || || ||||| |||||||| || ||| | ||||||||||| |||| || || | Sbjct 6706 TTTACCTCGAGCCGTGGCACGCCGACATCTTCGAGTTCCTTGACCTGCGCAAGAATCACG 6765 Query 104676 GTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCA 104735 | ||||| || ||| ||| || || || | || ||||||| || ||| | |||| Sbjct 6766 GCAACGAGCTGGAGCGAGCCCGTGACCTGTTTTATGCCCTCTGGACGCCTGATTTGTTCA 6825 Query 104736 TGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCC 104778 || || | || ||| | || | ||||| || ||||| || Sbjct 6826 TGCAGCGCGTGGAGAACGACGGTGACTGGTCCCTGTTTTGCCC 6868 >seq2632 Length=5999 Score = 118 bits (130), Expect = 1e-21 Identities = 277/416 (67%), Gaps = 24/416 (6%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 ||||| || || || ||||| ||||| || | ||| |||| ||| |||| || || ||| Sbjct 4381 CGATCGAAACGGCCGGGACGGAGGAGGGCCTGATCCAGGACGTCAGCGCGGTTGGTGGCG 4440 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 |||||||| | || || | | || || || ||||| || |||| || || || Sbjct 4441 GCGATGACGATGATGCCGGGGTTGCCCTCGAAGCCGTCCATTTCCGTCAGCAGCTGATTC 4500 Query 9644 ATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTGCTTTCCCA 9701 | || || || || || || || ||| || | ||| |||| || || |||| Sbjct 4501 AAGGTCTGCTCACGCTCGTCGTTTCCGCCCGCGAA--ACCCGCACCACGCTGGCGACCCA 4558 Query 9702 CGGCATCAATCTCATCAATGAAGACGATGCATG----GTTGATTTTCGCGAGCGACTTCA 9757 | || || |||||||| ||||| | |||||| | ||| | || || || || Sbjct 4559 CCGCGTCGATCTCATCGATGAAAATGATGCAAGGCGCGTTCTTCTTGGCCTGC----TCG 4614 Query 9758 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGT------TT 9811 || | || || |||||| || |||||||| |||||||||||||| || | Sbjct 4615 AACATGTCACGCACACGCGACGCACCCACACCCACAAACATCTCCACGAACTCGGACCCG 4674 Query 9812 GCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 9871 || |||||| ||||| || ||| ||| ||||| || | ||| ||| || || Sbjct 4675 GCCGCGGAA------ATGAAAGGCACACCAGACTCACCTGCCACGGCCTTGGCCAGCAGC 4728 Query 9872 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 |||||||| ||||| || || | |||| |||| || ||||||||||| || Sbjct 4729 GTCTTACCGGTACCGGGGGGCCCGTCCAGGATCACACCGCGAGGAATCTTGGCACC 4784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583087345528840