Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq54 179 1e-39 >seq54 Length=8408 Score = 179 bits (198), Expect = 1e-39 Identities = 224/304 (74%), Gaps = 6/304 (2%) Strand=Plus/Minus Query 349585 ATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGC 349644 || |||| |||||| ||||| | || |||||||| ||||| ||||||||||| || | Sbjct 2012 ATTTTTAAATGAAACGGTAACAAAGGCAGTTATTACAGTACCTGCCTATTTTAACGACTC 1953 Query 349645 CCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGAT 349704 || || || |||||||| || || | || || || ||| | ||| || | || || Sbjct 1952 TCAACGACAAGCGACAAAAGACGCAGGTAAGATCGCCGGTTTAGAGGTTTTACGTATTAT 1893 Query 349705 TAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaa 349764 |||||| || || || |||||| |||| ||||| | ||||||| || | || ||| Sbjct 1892 TAATGAGCCAACAGCAGCAGCACTTGCTTATGGTTTAGATAAAA-AAG---CAAATGAAA 1837 Query 349765 aaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGA 349824 |||| | |||||||| |||||||||||||| ||||| || ||| | || | ||| Sbjct 1836 CGATAT--TAATTTTTGACTTAGGTGGTGGTACATTTGACGTTTCAATCTTAGAAGTTGG 1779 Query 349825 AGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTT 349884 ||| || | || ||||| ||||||||||||||||| ||| | |||||||| ||||| Sbjct 1778 AGACGGCGTATTCGAAGTATTAGCAACTGCTGGTGATAGTCATTTAGGTGGAGATGATTT 1719 Query 349885 TGAT 349888 |||| Sbjct 1718 TGAT 1715 Score = 109 bits (120), Expect = 2e-18 Identities = 128/177 (72%), Gaps = 12/177 (7%) Strand=Plus/Plus Query 183680 ATCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCC 183739 ||||||||| || ||||||||||| |||| |||||||| ||| ||||| |||| || Sbjct 1715 ATCAAAATCATCTCCACCTAAATGACTATCACCAGCAGTTGCTAATACTTCGAATACGCC 1774 Query 183740 GTCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAAANNNNNNNN 183799 |||| ||| | ||| ||||| || ||||||||||||||||| || |||||| Sbjct 1775 GTCTCCAACTTCTAAGATTGAAACGTCAAATGTACCACCACCTAAGTCAAAA-------- 1826 Query 183800 NNNNNNNNNNNTTTCA---GATTGTTTATCTAACCCATATGCAATTGCTGCTGCGGT 183853 ||||| | || ||||||||| ||||| |||| ||||||||| || Sbjct 1827 -ATTAATATCGTTTCATTTGCTTTTTTATCTAAACCATAAGCAAGTGCTGCTGCTGT 1882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514792516839173