Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq7782 324 2e-83 seq17508 154 2e-32 seq11801 111 2e-19 >seq7782 Length=16676 Score = 324 bits (358), Expect = 2e-83 Identities = 542/771 (70%), Gaps = 16/771 (2%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTAC-ACGCGTGTCCGTGAGACGTAC 53251 |||||||||| ||| | || |||||| || ||| | |||| | | ||||| || Sbjct 6322 TCATGCGCGTGGCCATCGGCATCCACAAGGAGGACGTCGACGCC-GCCATCGAGACCTAT 6380 Query 53252 GACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 || | ||| ||||||| ||| ||||| ||||| || ||||| |||||||| || || Sbjct 6381 AACCTCATGTCCCAAAAGCTCTTCACGCATGCCACTCCCACCCTTTTCAACGCCGGCACC 6440 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 | ||| ||| | || ||||||||| | | |||||||| ||||| ||||| ||| Sbjct 6441 CCCCGCCCGCAGCTATCCTCCTGCTTCCTCCTCACCATGAAGGAGGACTCCATCGATGGC 6500 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG--TA 53429 |||||||| || |||||| | || ||| ||||||||| | | || || ||||| | Sbjct 6501 ATCTACGACACCCTCAAGCAATGCGCCGCCATCTCCAAATTCGCCGGCGGGATCGGCGTG 6560 Query 53430 TCCACTGCTCGAACGTCCGTGCGAACGGCACACCAA--TCAAGGGGACGAACGGCGTCGC 53487 |||| | | | ||| |||| || || || || | || || ||||||| | | Sbjct 6561 TCCA-TCCAC-AACATCCGCGCC--CGTGACTCCTACATCCGCGGCTCGAACGGTACCTC 6616 Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547 | | || |||||||| ||||| || ||||||||| |||||||||| ||||| ||||||| Sbjct 6617 CAACGGTATCGTGCCCATGCTGCGTGTCTTCAACGACACGGCCCGCTACGTGGACCAGGG 6676 Query 53548 TGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607 || || ||||||||||| || |||||||| |||||||||||||||||||||||||| | Sbjct 6677 GGGGGGAAAGCGCAAGGGCTCCTTCGCCATTTACCTCGAGCCGTGGCACGCCGACATCTT 6736 Query 53608 GGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT 53667 ||||| || || ||||| |||||| || |||| | ||| |||||||||||| Sbjct 6737 CGAGTTCCTTGACCTGCGCAAGAATCACGGCAACGAGCTGGAGCGAGCCCGTGACCTGTT 6796 Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTA 53727 | || || |||| || || | |||||||| |||||||| |||| || |||| Sbjct 6797 TTATGCCCTCTGGACGCCTGATTTGTTCATGCAGCGCGTGGAGAACGACGGTGACTGGTC 6856 Query 53728 CCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGA 53787 |||| | ||||| || |||||||||||| | || || | ||| |||||||| || | Sbjct 6857 CCTGTTTTGCCCCAATGAGTGCCCCGGCTTGGCGGACGTGTGCGGGGAGGAGTTCAAGCA 6916 Query 53788 GATGTATCGGACGTACGCAGTTCAGGGCCGCTA--CAAG-AAGAAGGTCAAGGCGCGTGA 53844 | | || | |||||| || || || | | || | ||| | ||||||| | | Sbjct 6917 GCTCTACGAGTCGTACG-AG--AAGAGCGGGAAGGCACGCAAGGTGATCAAGGCCCAACA 6973 Query 53845 GGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAA 53904 | | ||| || | | | ||||||||||||||| ||||| |||||| | || Sbjct 6974 GCTGTGGTTCGCCGTGTTGGACTCCCAGGTGGAGACGGGCACGCCCTACATGCTGTTTAA 7033 Query 53905 GGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATC 53955 ||| | |||| ||| |||||| |||| | || || ||||| || Sbjct 7034 GGACGCTTGCAACCTCAAGTCGAACCAGCAGAATCTGGGGGTGATCAAGTC 7084 Score = 241 bits (266), Expect = 1e-58 Identities = 571/841 (68%), Gaps = 50/841 (6%) Strand=Plus/Plus Query 55127 GTTGTGACTCGGAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCG 55186 || ||||| || ||||||||||| |||||||||| || | |||||| || | ||| Sbjct 7245 GTGGTGACCCGCAACCTGAACCGCGTCATCGACATCAACTTCTACCCTGTGGAGGAGGC- 7303 Query 55187 CGCAAG---TCCAACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGAC 55243 |||| |||||| | || ||||| ||||||| ||| ||||| || ||| |||| || Sbjct 7304 --CAAGCGTTCCAACATGCGCCACCGACCCATCGGCATTGGTGTCCAAGGCCTGGCGGAT 7361 Query 55244 ATCTTCATGATGCTCGGATTGCCCTTCGA--CTCGGAACCTGCTCGAGAAATTAACCAGG 55301 |||||| | | | | || |||||||| ||| | || || | || | ||| ||| Sbjct 7362 GCCTTCATCAAGATGCGGTTCCCCTTCGAGTCTCCGGACGCGCACCAGC--TGAACAAGG 7419 Query 55302 ACATCTTC-AGTCGCATCTACTTTGCAGCGCTCGAGGAGTCGTGTCATC----TGGCTAT 55356 |||||||| || | ||| ||||| | |||| || ||| | | ||| | || || Sbjct 7420 ACATCTTCGAGAC-CATGTACTTCG--GCGC-CGTGGAAGCCTC-CATGGAAATTGCCAT 7474 Query 55357 GAGCGAGGGGACCTACGAGACGTT--CCGTGATTCGCCAGCTGACAAGGGACTTCTCCAG 55414 || ||||| ||||||||||||| ||| | | | ||| | | |||||| | |||| Sbjct 7475 GAAGGAGGGCCCCTACGAGACGTTTGCCG-GCTCCCCCATCAG-CAAGGGCGTCTTCCAA 7532 Query 55415 TTCGATCTATGGGGCAAGTCTGACCCCAT------GTTTGACAAGTTGAAGCAT----GA 55464 ||||| | |||||| ||| ||||| | | | | | || | | Sbjct 7533 TTCGACATGTGGGGC--GTC--ACCCCCTCCACCCGCTGGGACTGGCCCGGCCTCCGCGC 7588 Query 55465 CA---TTCACTTGTGGGGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTC 55521 || | || | ||| | ||||| ||||| || | ||||| ||||| ||||| || Sbjct 7589 CAAGGTCCAGGAGCACGGCGTGCGCAATTCCCTCCTGCTCGCGCCCATGCCCACCGCTTC 7648 Query 55522 GACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCT 55581 || || |||||| | |||||||||||| | ||||||| | || ||||||| ||| Sbjct 7649 CACCGCGCAGATCCTAGGCAACAACGAGTCAGTCGAGCCCTTTACCTCCAACATGTACTC 7708 Query 55582 GCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCA 55641 || || ||||| |||||||| ||| |||||||| |||| ||| |||||| Sbjct 7709 CCGACGTGTGCTAGCGGGTGAGTTCACCATCGTCAACAAGTACCTGCTCAGCGACCTGAT 7768 Query 55642 GAAGATCAACAAGTGGAACCCGCAGAT---CAAGACGGATATTGTGCGGAACGGGGGGTC 55698 || ||||||| | || | ||| | ||| || || ||| | || || Sbjct 7769 CGAGCGTGGGCTGTGGAACGCCGAGGTGCGCAAC-CAGATCATGGGC--AACCGTGGCTC 7825 Query 55699 CGTCCAGAATCTGG--AGATTCCTCTGCGT-CTCAAGGAGATTTACCGGACGGTGTGGGA 55755 ||| || || ||| || ||| | ||| ||||||||| | ||| ||| |||||||| Sbjct 7826 CGTGCAAAACGTGGCCAGCATCCCCCGCGAGCTCAAGGAGCTCTACAAGACCGTGTGGGA 7885 Query 55756 GATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTC 55815 ||| | |||||| | | || |||||| || || || || || |||||| |||||| Sbjct 7886 GATCCGGCAGAAGTGCGTCATCGACATGGCGGCCGACCGCGGCGCCTACATCTGCCAGTC 7945 Query 55816 CCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTT 55875 |||||| || |||||| | ||| || || | | ||| || | | ||| |||||||| Sbjct 7946 CCAGTCCCTCAACATCCACCTGGCCAACCCCACGCCCGCCCAGCTCACCTCCATGCACTT 8005 Query 55876 TTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGACCCGCGCCAAGGC 55935 ||| ||||||||||| |||||||| || |||||||| || || |||||| ||||||| Sbjct 8006 CTACTCCTGGAAGAAGGGGCTCAAGACCGGCATGTACTACCTTCGCACCCGCCCCAAGGC 8065 Query 55936 C 55936 | Sbjct 8066 C 8066 >seq17508 Length=3941 Score = 154 bits (170), Expect = 2e-32 Identities = 396/591 (67%), Gaps = 9/591 (2%) Strand=Plus/Plus Query 53170 TGGTGAGACGCCT-CAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACT 53228 ||||| ||||| ||||| | | ||||| || || ||||| || || || | |||| Sbjct 2112 TGGTGGAACGCCCGCAGTACATGGTGATGCGGGTGGCGTTGGGGATACATGGGAAGGACT 2171 Query 53229 -ACACGCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACG 53287 | | ||| | |||||||| || || ||||| | |||| |||| ||||| || Sbjct 2172 TAGAGGCGGCATTG-GAGACGTATGAATTGATGAGTAATAAGTGGTTTATCCACGCGTCG 2230 Query 53288 CCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCG 53347 || ||| ||||| | || || ||| | ||| |||||||| || || ||| || || Sbjct 2231 CCTACCTTGTTCCATGCCGGGACGCGTTTCCCCCAGATGTCTTCGTGTTTTCTGTTGACG 2290 Query 53348 ATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCC 53407 ||| || || ||||| | || || || || ||| | ||| |||| || || Sbjct 2291 ATGCAGTCGGATTCGATTGTGGGGATTTATGATACGTTGAAGCAGTGCGCGGTGATTAGT 2350 Query 53408 AAGTGGTCGGGTGGTATCGGTATC-CACTGCTCGAACGTCCGTGCGAACGGCACACCAAT 53466 ||| ||||||| || ||| | | ||| | || | || ||| |||| | || Sbjct 2351 AAGGCAGCGGGTGGGATTGGTTTGTCGGTGCAC-AATATTCGCGCGCACGGAGCCTATAT 2409 Query 53467 CAAGGGGACGAACGGCGTCG-CCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACA 53525 |||||||||||| || | || | |||| | ||||| ||||| || || || || | Sbjct 2410 CAAGGGGACGAA-GGGGACGAGCAATGGTTTAGTGCCGATGCTGCGTGTGTTTGACGTGA 2468 Query 53526 CGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCG 53585 |||| || || || | ||||| || |||||||| |||| | || || || ||| | | Sbjct 2469 CGGCGCGATATGTTGATCAGGGCGGGGGGAAGCGGCCGGGGGCCTTTGCGATTTACATTG 2528 Query 53586 AGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAG 53645 |||||||||| || || ||| | ||| | || || || | ||||| || | |||| Sbjct 2529 AGCCGTGGCATGCGGATATTTTTGAGGTGCTTGACTTGAGGAAAAATCATGGGAAGGAAG 2588 Query 53646 AGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGG 53705 || ||| ||||| ||||| | |||||||| || || | || ||| | | || Sbjct 2589 AGGCGCGGGCGCGTGATCTGTTCTATGGGCTGTGGATCCCTGATTTGTTTATGAAGAGGG 2648 Query 53706 TGGAGAAGGACGAGGAGTGGTACCTGATGTG-CCCGAACGAGTGCCCCGGC 53755 ||||| |||| | || ||||| ||||||| ||||| | | ||||| ||| Sbjct 2649 TGGAGGAGGATGGGGTGTGGTCGTTGATGTGTCCCGATC-AATGCCCTGGC 2698 >seq11801 Length=2927 Score = 111 bits (122), Expect = 2e-19 Identities = 202/296 (68%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 152022 CAAACGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCC 152081 ||| ||||| |||| ||||| | ||| || || ||||| || || | || ||| || Sbjct 2444 CAACCGCGTAAAGACATATCGAGGGCTTGCGGCGTCCTTCCCCCCCATAATCCTCGTGCC 2385 Query 152082 AAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAA 152141 |||||| ||| || || | | | |||||| | ||| || ||||||||||||| Sbjct 2384 AAACTGCCCACTCGGGAACAGAAAGCCAATGTTGTTCGAGCCGACAAAATTCTGAGCCAT 2325 Query 152142 ATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGAT 152201 ||||| || || | || || || |||||||||||||||| ||||| | | Sbjct 2324 CCCGACAATGGTCCCGTTCAACGAGGCCTCCCCGTGGTGATACGCCGAATGCTCAGACAC 2265 Query 152202 GTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTA 152261 || || || | |||||| ||||| || ||| || ||| | ||| | ||| || | Sbjct 2264 ATACCCAGCAAGCTGCGCGACCTTAATCTCCTTCTTCAAACTTCGCTTAAAACACGCAAA 2205 Query 152262 AATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCT 152317 | |||||| ||||| | || ||||| || |||| || || || ||||| |||| Sbjct 2204 CAACACCTTCCGCTGCGCCGGCTTCAACCCATCCATCAAATGCGGGATCGACCGCT 2149 Score = 104 bits (114), Expect = 3e-17 Identities = 191/280 (68%), Gaps = 0/280 (0%) Strand=Plus/Minus Query 117314 TAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGC 117373 || |||| |||||| || ||||| || || || | ||| || || || |||||||| Sbjct 2428 TATCGAGGGCTTGCGGCGTCCTTCCCCCCCATAATCCTCGTGCCAAACTGCCCACTCGGG 2369 Query 117374 TCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCT 117433 || | | | |||||| | ||| ||||| || ||||||| |||||| || || Sbjct 2368 AACAGAAAGCCAATGTTGTTCGAGCCGACAAAATTCTGAGCCATCCCGACAATGGTCCCG 2309 Query 117434 TGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGA 117493 | | ||||| || ||||||||||||| ||||| | ||| || || || ||||| Sbjct 2308 TTCAACGAGGCCTCCCCGTGGTGATACGCCGAATGCTCAGACACATACCCAGCAAGCTGC 2249 Query 117494 GCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGA 117553 || ||||| || || | ||| | ||| | || ||| | | |||||| ||||| Sbjct 2248 GCGACCTTAATCTCCTTCTTCAAACTTCGCTTAAAACACGCAAACAACACCTTCCGCTGC 2189 Query 117554 CTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCT 117593 ||||||| |||||| || || |||||||| |||| Sbjct 2188 GCCGGCTTCAACCCATCCATCAAATGCGGGATCGACCGCT 2149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547053264801800