Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq7782 444 7e-120 seq22358 141 1e-28 seq13286 131 2e-25 seq5368 116 4e-21 seq11801 95.1 1e-14 >seq7782 Length=16676 Score = 444 bits (492), Expect = 7e-120 Identities = 1180/1789 (66%), Gaps = 55/1789 (3%) Strand=Plus/Minus Query 80005 ACCGTCACCTGAATTGGCTTGGCCTTTGCCCGCGTCCGCAGATAGTACATGCCCGTCTTG 80064 ||||| | |||||| | | |||||| | || || || || ||||||||||| |||||| Sbjct 8086 ACCGTGAACTGAATGGCATCGGCCTTGGGGCGGGTGCGAAGGTAGTACATGCCGGTCTTG 8027 Query 80065 AGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCC 80124 || |||||||||||| ||| | |||||| || |||||| || | |||||||| || Sbjct 8026 AGCCCCTTCTTCCAGGAGTAGAAGTGCATGGAGGTGAGCTGGGCGGGCGTGGGGTTGGCC 7967 Query 80125 ATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCACGATCTGCCGCCATTTCA 80184 | | |||||| || ||||| ||||| |||||| | || || || || |||||||| || Sbjct 7966 AGGTGGATGTTGAGGGACTGGGACTGGCAGATGTAGGCGCCGCGGTCGGCCGCCATGTCG 7907 Query 80185 ATAATTGACTTTTGTGGAATTTCCCATACTGTACGATACACCTTACGAAGCTCCTCTGGA 80244 || | |||| || | || ||||| || || || | || ||||| || Sbjct 7906 ATGACGCACTTCTGCCGGATCTCCCACACGGTCTTGTAGAGCTCCTTGAGCTCGCGGGGG 7847 Query 80245 ATGT---CCAGATTTTGCACACTGCCACCGTCCTTTACAATTTGATTTTTCAATTCAGAC 80301 ||| ||| |||||||| ||||| || | || || || || || | Sbjct 7846 ATGCTGGCCACGTTTTGCACGGAGCCACGGTTGCCCATGATCTGGTTGCGCACCTCGGCG 7787 Query 80302 GTCCAGACACCAAGCTTGTGCAGATCTTTCACAAGGTGCTTGTTAATCATGACAAACTCT 80361 |||| | ||| ||| | ||| || | | |||| |||||| | ||| ||||| Sbjct 7786 TTCCACAGCCCACGCTCGATCAGGTCGCTGAGCAGGTACTTGTTGACGATGGTGAACTCA 7727 Query 80362 CCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTT 80421 ||||| || || || |||| ||| | || | ||||| | || ||||||||| Sbjct 7726 CCCGCTAGCACACGTCGGGAGTACATGTTGGAGGTAAAGGGCTCGACTGACTCGTTGTTG 7667 Query 80422 CCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGG 80481 || |||||||| || ||| || || ||||| || ||| || || ||||| |||| | Sbjct 7666 CCTAGGATCTGCGCGGTGGAAGCGGTGGGCATGGGCGCGAGCAGGAGGGAATTGCGCACG 7607 Query 80482 CCGTGCTTCTTGATATCCTCGCGCAAATCTGACCAAAAATCAACCCCA--ACGCTGTGAC 80539 ||||||| || || | |||| | | | ||| || | | | ||||| Sbjct 7606 CCGTGCTCCTGGACCTTGGCGCGGAGGCCGGGCCAGTCC-CAGCGGGTGGAGGGGGTGAC 7548 Query 80540 --CCCACATGTCGTGCTGCAAGATGCCCT--CCGACGCCGGAGACCCCGCGAACGTCTCG 80595 ||||||||||| || |||| ||||| | || | |||| || || ||||||||| Sbjct 7547 GCCCCACATGTCGAATTGGAAGACGCCCTTGCTGATGGGGGAG--CCGGCAAACGTCTCG 7490 Query 80596 TACGGGCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCAC 80655 || ||||||||| || |||| | || || | | ||| || || ||| | Sbjct 7489 TAGGGGCCCTCCTTCATGGCAATTTCCATGGAGGCTTCCACGGCGCCGAAGTACATGGTC 7430 Query 80656 TCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATC 80715 || |||| | ||||||||| | |||| | || ||||| | || | |||| | Sbjct 7429 TCGAAGATGTCCTTGTTCAGCTGGTGCGCGTCCGGAGACTCGAAGGGGAACCGCATCTTG 7370 Query 80716 ATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGAT 80775 ||||| | || |||||||| || || || ||| |||| || ||||||||| |||| || Sbjct 7369 ATGAAGGCATCCGCCAGGCCTTGGACACCAATGCCGATGGGTCGGTGGCGCATGTTGGAA 7310 Query 80776 CGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTA 80835 |||| ||||||| | ||||| ||||| | ||||||||||||||||||||||| || Sbjct 7309 CGCTTGGCCTCCTCCACAGGGTAGAAGTTGATGTCGATGACGCGGTTCAGGTTGCGGGTC 7250 Query 80836 ACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAA----------TT---------- 80875 || ||| || | || | || ||| | |||| | || Sbjct 7249 ACCACCTTGGTGATCTCGTACAGACGCTGCAGGTCGTAGGTAGGGGCCTTGCCGCTGCCC 7190 Query 80876 ---GGTTCC-CCTTCACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACC 80931 || ||| || |||||| |||| ||| | | || || || ||||| ||||||||| Sbjct 7189 GAAGGCTCCTCCAGCACAAAGGCCGAGAGGTTGACCGAGGCAAGGTTGCAGACGGCCACC 7130 Query 80932 TCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCC 80991 || || | | || |||||| ||| |||||||| | || || ||||| || ||| Sbjct 7129 TCGTCGGGGGCGGTGTACTCGATGATCTCCGTGCAAAGGTTGGAGGACTTGATCACCCCC 7070 Query 80992 AGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCG 81051 || || | |||||| |||||| ||||||||||||||| | |||||| || || || Sbjct 7069 AGATTCTGCTGGTTCGACTTGAGGTTGCAAGCGTCCTTAAACAGCATGTAGGGCGTGCCC 7010 Query 81052 GTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGG 81111 ||||| ||||| || | | | |||| ||| | || | ||||||| ||||||||| Sbjct 7009 GTCTCCACCTGGGAGTCCAACACGGCGAACCACAGCTGTTGGGCCTTGATCACCTTGCG- 6951 Query 81112 AATTTGCCTT-CGGC----CACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGA 81165 |||||| | || | | ||| |||| |||| | | ||||| | ||| Sbjct 6950 ----TGCCTTCCCGCTCTTCTCGTACGACTCGTAGAGCTGC-TTGAACTCCTCCCCGCAC 6896 Query 81166 AGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCT 81225 | || | | | | |||||||| || ||||| | |||| |||||| ||||||||| Sbjct 6895 ACGTCCGCCAAGCCGGGGCACTCATTGGGGCAAAACAGGGACCAGTCACCGTCGTTCTCC 6836 Query 81226 ACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCC 81285 || || |||||| ||||| |||||||||| |||||||| ||| ||| || Sbjct 6835 ACGCGCTGCATGAACAAATCAGGCGTCCAGAGGGCATAAAACAGGTCACGGGCTCGCTCC 6776 Query 81286 TCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGC 81345 ||| | || || || ||||| || || || || | |||||| || ||||| ||| Sbjct 6775 AGCTCGTTGCCGTGATTCTTGCGCAGGTCAAGGAACTCGAAGATGTCGGCGTGCCACGGC 6716 Query 81346 TCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCA 81402 || || || | ||||| || |||||||| | || ||||||| ||||| ||||| Sbjct 6715 TCGAGGTAAATGGCGAAGGAGCCCTTGCGCTTTCCCCCCCCCTGGTCCACGTAGCGGGCC 6656 Query 81403 GTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACG 81462 || |||| || ||||||| ||| || | |||||| | || |||||||| || | Sbjct 6655 GTGTCGTTGAAGACACGCAGCATGGGCACGATACCGTTGGAGGTACCGTTCGAGCCGCGG 6596 Query 81463 ATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTT 81522 || || | |||||| | ||| ||| || | ||||| || || | | || Sbjct 6595 ATGTAGGAGTCACGGGCGCGGATGTTGTGGATGGACACGCCGATCCCGCCGGCGAATTTG 6536 Query 81523 GAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATG 81582 || || || || | || | ||| || || || || |||||| || | |||||| Sbjct 6535 GAGATGGCGGCGCATTGCTTGAGGGTGTCGTAGATGCCATCGATGGAGTCCTCCTTCATG 6476 Query 81583 TCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGG 81642 || | ||| ||| || | ||| |||| | |||||| ||||| || || || Sbjct 6475 GTGAGGAGGAAGCAGGAGGATAGCTGCGGGCGGGGGGTGCCGGCGTTGAAAAGGGTGGGA 6416 Query 81643 GTCGCGTGAATGAAATAACGGTT-TGACATCAGGTCATAGGTTTCCTTGAC-GCGTGGAA 81700 || || || || || | | || ||||| |||| |||||| || || | |||| | | Sbjct 6415 GTGGCATGCGTG-AAGAGCTTTTGGGACATGAGGTTATAGGTCTCGATGGCGGCGTCG-A 6358 Query 81701 TATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACTGGGG 81749 || || ||| || ||||| || || ||||| | ||||| |||||| Sbjct 6357 CGTCCTCCTTGTGGATGCCGATGGCCACGCGCATGATCATGTGCTGGGG 6309 >seq22358 Length=3586 Score = 141 bits (156), Expect = 1e-28 Identities = 169/228 (74%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || |||||||| || || || || || ||| | | Sbjct 3099 ATGCAAATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGATGTCGAGCCCAGC 3158 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||| || || |||||||||||||| || || || |||||| Sbjct 3159 GACACCATCGAGAATGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 3218 Query 27526 CAGCGTCTAATTTTTGC-TGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||| || || || || || ||||| || ||||| | || || || | ||||| || Sbjct 3219 CAGCGCCTCATCTTCGCGGGGCAAGCAGCTGGAGGACGGCCGCACGCTCTCGGACTACAA 3278 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| ||||| || || | ||| ||||||| || || || Sbjct 3279 CATCCAAAAGGAGTCCACCCTGCACTTGGTCCTGCGTCTGCGAGGCGG 3326 >seq13286 Length=1322 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || ||||| || || || || || || ||| | | Sbjct 891 ATGCAAATCTTCGTCAAGACCCTGACGGGCAAAACCATCACGCTCGACGTGGAGCCCAGC 950 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||| || || |||||||||||||| || || || |||||| Sbjct 951 GACACGATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 1010 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| || ||||| | || || || | ||||| || Sbjct 1011 CAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGACGGGCGCACGCTTTCGGACTACAAC 1070 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || | || |||||||| || || || Sbjct 1071 ATCCAGAAGGAGTCCACCCTGCACTTGGTGTTGCGTCTGCGTGGCGG 1117 >seq5368 Length=5397 Score = 116 bits (128), Expect = 4e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || |||||||| || || || || || ||| | | Sbjct 2757 ATGCAAATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGATGTGGAGCCCAGC 2698 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || |||| || || |||||||||||||| || || || |||||| Sbjct 2697 GACACCATCGAGAACGTGAAACAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 2638 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT 27572 ||||| || || ||||| || ||||| || ||||||| ||||| || Sbjct 2637 CAGCGACTCATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGTACGCT 2591 >seq11801 Length=2927 Score = 95.1 bits (104), Expect = 1e-14 Identities = 196/292 (67%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 31961 AGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACG 32020 ||||||| || || || || ||| || | ||||| | ||||| |||||| | | | Sbjct 2149 AGCGGTCGATCCCGCATTTGATGGATGGGTTGAAGCCGGCGCAGCGGAAGGTGTTGTTTG 2208 Query 32021 CCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGG 32080 | || | ||| | || || || || ||||| |||||||| | || || ||| Sbjct 2209 CGTGTTTTAAGCGAAGTTTGAAGAAGGAGATTAAGGTCGCGCAGCTTGCTGGGTATGTGT 2268 Query 32081 CAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTG 32140 | ||||| |||| ||||||||||| ||||| ||| | | || ||||||||| | | Sbjct 2269 CTGAGCATTCGGCGTATCACCACGGGGAGGCCTCGTTGAACGGGACCATTGTCGGGATGG 2328 Query 32141 CTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGA 32200 ||||||| |||||||| | || ||| | ||| || || ||| |||||||| | Sbjct 2329 CTCAGAATTTTGTCGGCTCGAACAACATTGGCTTTCTGTTCCCGAGTGGGCAGTTTGGCA 2388 Query 32201 CCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCG 32252 | || | || || ||||| || || ||| | || || |||| || || Sbjct 2389 CGAGGATTATGGGGGGGAAGGACGCCGCAAGCCCTCGATATGTCTTTACGCG 2440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570140796815920