Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq13286 113 3e-20 seq22358 95.1 8e-15 >seq13286 Length=1322 Score = 113 bits (124), Expect = 3e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||||||||||| || || ||| |||||| || ||||| || || ||| Sbjct 1117 CCGCCACGCAGACGCAACACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 1058 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| |||| || || || || || || || || | ||||| ||||| ||||| Sbjct 1057 AGCGTGCGCCCGTCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 998 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||||||||| || ||| | || ||||| | |||||| Sbjct 997 ATGCCCTCCTTGTCCTGGATCTTTTG-CTTCACGTTCTCGATCGTGTCGCTGGGCTCCAC 939 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || | || || ||||| || || | || || || || || ||||| || Sbjct 938 GTCGAGCGTGATGGTTTTGCCCGTCAGGGTCTTGACGAAGATTTGCATCTT 888 >seq22358 Length=3586 Score = 95.1 bits (104), Expect = 8e-15 Identities = 113/152 (74%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 ||||||||| ||||||| ||||| || || ||| ||||||||| ||||| || || | Sbjct 3328 CGCCGCCTCGCAGACGCAGGACCAAGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCCG 3269 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCG-GCAAATATTAAACGCTGTTGGTCCGGC 34596 | || || || |||| || || || || || || || || | ||||| ||||| ||| Sbjct 3268 AGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCCGCGAAGATGAGGCGCTGCTGGTCGGGC 3209 Query 34597 GGCACTCCCTCCTTGTCTGTGATCTTTTGTTT 34628 || | ||||||||||| ||||||||| || Sbjct 3208 GGGATGCCCTCCTTGTCCTGGATCTTTTGCTT 3177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314638343267303