Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq22358 116 3e-21 seq10165 87.8 2e-12 seq21338 86.0 5e-12 >seq22358 Length=3586 Score = 116 bits (128), Expect = 3e-21 Identities = 164/229 (72%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || ||||| |||||| | || || || || || || || | Sbjct 3099 ATGCAAATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGATGTCGAGCCCAGC 3158 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || ||||| || || ||||| || ||||| || ||||| || Sbjct 3159 GACACCATCGAGAATGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 3218 Query 27108 CAGCGTTTAATATACGCCGG-CAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||| || ||| || |||| ||| | || | || || ||||| Sbjct 3219 CAGCGCCTCATCTTCGCGGGGCAAGCAGCTGGAGGACGGCCGCACGCTCTCGGACTACAA 3278 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||| ||||||||||| ||| | || ||||| ||||| |||| || ||| Sbjct 3279 CATCCAAAAGGAGTCCACCCTGCACTTGGTCCTGCGTCTGCGAGGCGGC 3327 >seq10165 Length=1505 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | || || || || ||||| ||| Sbjct 126 CATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGAG 67 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| |||| |||| || || || || || || ||||| ||||||||||| || || || Sbjct 66 CGACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATACCCCCTGACCA 7 Query 27107 ACA 27109 || Sbjct 6 GCA 4 >seq21338 Length=400 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| ||||| ||||| | ||||| | | | || || ||| Sbjct 387 ATGCAGATCTTCGTCAAAACGCTGACTGGCAAAACCATTACAGTCAATATCGATCCTTCC 328 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || | ||| ||| ||| || ||||| || ||||||||| Sbjct 327 GACACCATCTGGACTTTGAAGCAGGAGATTGAAGTCAAGGAGGGCATCCCGCCCGATCAA 268 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || ||||| || |||| |||| |||| || || | || ||||| Sbjct 267 CAGCGGCTCATTTACGCGGGTGAACAGGTGGAGGACACGCGCACAGTCGCGGACTACAAA 208 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || |||||||| || Sbjct 207 ATCCAGAAGGAGTCCAC 191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434789060704320