Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq288 401 8e-107 seq620 187 3e-42 seq49 98.7 1e-15 >seq288 Length=849 Score = 401 bits (444), Expect = 8e-107 Identities = 436/577 (76%), Gaps = 6/577 (1%) Strand=Plus/Plus Query 176104 TGGGAGCAGTTTTGCCAGTGGGTCACCAATACAAACAACAGAATTTACGTTGGTTGGTTT 176163 ||||||| || ||| ||| |||| | ||| | ||| | | ||| | |||||||| Sbjct 276 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 335 Query 176164 GGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGTTTTATCGTTGCATTTATT 176223 ||||| | ||||| ||| | | || ||| || || || ||| | || ||||| Sbjct 336 GGTGTTTTAATGATCCCAACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTTATC 395 Query 176224 GCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTAT 176283 || ||||| || || |||||||||||||| || |||||||| || ||||| || | || Sbjct 396 GCTGCACCTCCAGTTGATATCGACGGTATCCGTGAACCAGTTGCTGGATCACTTTTATAC 455 Query 176284 GGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTC 176343 ||||||||||||||| | || ||||| | || || || ||| | ||||| | |||||| Sbjct 456 GGAAACAACATCATCACTGGTGCAGTTATTCCTAGTTCTAACTCTATCGGTATTCACTTC 515 Query 176344 TACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAA 176403 |||||| | |||||||| || | | ||||| ||||| ||||| || || || |||||| Sbjct 516 TACCCAGTTTGGGAAGCTGCGTCTTTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAA 575 Query 176404 CTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCT---TACATGGGACGCCAATGGGAA 176460 || || ||||| |||||| | | ||| | |||| ||||||||||| |||||||| Sbjct 576 CTTGTAGTATTACACTTCTTATTAGGTGT---AGCTTGCTACATGGGACGTGAATGGGAA 632 Query 176461 CTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCT 176520 ||||| ||| | |||| |||||||||||||| | || || | ||| || |||||| || Sbjct 633 CTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCT 692 Query 176521 GCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATG 176580 ||||| ||||| ||| | || || ||| |||| ||||| ||||||||||||||| Sbjct 693 GCAGCATCTGCAGTATTCTTAGTTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATG 752 Query 176581 CCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATT 176640 ||| | || ||||| ||||| |||||||| ||||| |||||||||||||| ||||||||| Sbjct 753 CCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATT 812 Query 176641 CTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTG 176677 || |||||||||||||||||| ||| || || |||| Sbjct 813 CTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTG 849 >seq620 Length=282 Score = 187 bits (206), Expect = 3e-42 Identities = 212/282 (75%), Gaps = 7/282 (2%) Strand=Plus/Plus Query 176679 GTTTGGTGGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAG 176738 ||||||||| ||| | ||| || |||||||| |||||| || ||| | | | Sbjct 1 GTTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCG 60 Query 176739 AGAGACAACCGAAAACGA---ATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGA 176795 || ||| ||| ||| ||| |||||||||||||||||||||||||||||||| Sbjct 61 TGA---AACTGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGA 117 Query 176796 GACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTC 176855 || |||||||| ||||||||||||||||||||||| ||| | |||||||| || || Sbjct 118 AACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAG 177 Query 176856 TTTCAATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTG 176915 |||||| ||||| | | | ||||||||| | || || | |||||||| | ||||| Sbjct 178 TTTCAACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTG 237 Query 176916 GTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAA 176957 ||| ||||| | |||||| | || ||||||||||| ||||| Sbjct 238 GTTAACTGCTCTTGGTGTTAGTACTATGGCATTCAA-CTTAA 278 >seq49 Length=2147 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 176931 TGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAA 176990 |||| | || |||||||||||| | || ||||||||||||||||| || || | || | Sbjct 2147 TGTTAGTACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAG 2088 Query 176991 CTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGA 177050 | || ||||| || |||| || || | |||||||| | | |||||||| Sbjct 2087 CCAAGGCCGCGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGA 2028 Query 177051 AGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGA 177089 ||| |||||||| ||||| || ||||||||||| || || Sbjct 2027 AGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGA 1989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603314928309120