Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq19097 161 9e-35 >seq19097 Length=7688 Score = 161 bits (178), Expect = 9e-35 Identities = 289/417 (69%), Gaps = 4/417 (1%) Strand=Plus/Plus Query 34384 TCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGA 34443 |||||||||||| |||||||| || || || ||||| |||||| | || || |||||||| Sbjct 2694 TCGGGAGGAGGGGGACTTGGGGCCAGTGTATGGGTTTCAGTGGCGGCATTTCGGGGCGGA 2753 Query 34444 GTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGA 34502 ||| || | | || || ||| |||| |||| || ||||| |||| | || Sbjct 2754 ATATAAGGATATGCACGCTGATTATACGGGGAAGGGCATCGATCAGCTGGCAG-CGGCGA 2812 Query 34503 TCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGA 34562 | || || | ||| |||||| || || || |||| | | | |||||||||||| Sbjct 2813 TTGAGACGATTAAGAAGAACCCGGAGGATCGACGGATTATTGTCTCGGCGTGGAACCCGG 2872 Query 34563 AGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGA 34622 ||| | |||||| | || || || |||| | || || |||||||| || | Sbjct 2873 CCGATTTGGGGAAGATGGCCTTGCCGCCTTGTCACATGTTTTGTCAGTTCTACGTGGCCA 2932 Query 34623 ATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGT 34682 |||||||| ||||||||||| | || ||||| | || ||||| || || ||||||| Sbjct 2933 ATGGGGAGTTGTCCTGCCAGATGTACCAACGCAGTGCGGATATGGGCTTGGGCGTGCCGT 2992 Query 34683 TCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTG-GGGTTGGTT 34741 | || ||||| |||||| || | ||| || | || || || ||| |||||| Sbjct 2993 TTAATATTGCGTCTTACGCGTTGTTGACGCGGTTGGTGGCGCAGGT-GTGTGGGTTGAAG 3051 Query 34742 CCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAG 34798 | |||||| | ||||||||| | |||||||| || | ||| ||||| ||||| Sbjct 3052 GCGGGGGAGTTTGTGCATACGATTGGGGATGCCCACGTGTACTCCAACCATGTCGAG 3108 Score = 161 bits (178), Expect = 9e-35 Identities = 289/417 (69%), Gaps = 4/417 (1%) Strand=Plus/Minus Query 6547 CTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAAC 6606 ||||| ||||| ||| | || |||||||| | ||||||||| | |||||| | Sbjct 3108 CTCGACATGGTTGGAGTACACGTGGGCATCCCCAATCGTATGCACAAACTCCCCCGCCTT 3049 Query 6607 CAACCC-CACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACG 6665 |||||| ||| || || || | || ||| | || |||||| ||||| || |||| Sbjct 3048 CAACCCACAC-ACCTGCGCCACCAACCGCGTCAACAACGCGTAAGACGCAATATTAAACG 2990 Query 6666 GCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCG 6725 |||| || || ||||| || | ||||| || | ||||||||||| ||||||||| | Sbjct 2989 GCACGCCCAAGCCCATATCCGCACTGCGTTGGTACATCTGGCAGGACAACTCCCCATTGG 2930 Query 6726 CGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCG 6785 | |||||||| || || | |||| || || || | |||||| | ||| || Sbjct 2929 CCACGTAGAACTGACAAAACATGTGACAAGGCGGCAAGGCCATCTTCCCCAAATCGGCCG 2870 Query 6786 GGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCA 6845 |||||||||| | | | |||| || || || |||||| ||| | || || ||| Sbjct 2869 GGTTCCACGCCGAGACAATAATCCGTCGATCCTCCGGGTTCTTCTTAATCGTCTCAATCG 2810 Query 6846 CGTACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCC 6904 | |||| ||||| || |||| |||| ||| || || | | || ||| ||| Sbjct 2809 CCG-CTGCCAGCTGATCGATGCCCTTCCCCGTATAATCAGCGTGCATATCCTTATATTCC 2751 Query 6905 GCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGA 6961 ||||| || || | |||||| ||||| || || || |||||||| |||||||||||| Sbjct 2750 GCCCCGAAATGCCGCCACTGAAACCCATACACTGGCCCCAAGTCCCCCTCCTCCCGA 2694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448129092365520