Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq22358 170 4e-37 seq13286 161 2e-34 seq5368 141 2e-28 seq10165 98.7 2e-15 >seq22358 Length=3586 Score = 170 bits (188), Expect = 4e-37 Identities = 168/216 (78%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| || |||||||| ||||||||||| || |||| || || | || || Sbjct 3311 AGGACCAAGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCC 3252 Query 210963 TCCAGCTGCTTGCCT-GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 |||||||||||||| |||||||| ||||| || ||||| || || | || |||||||| Sbjct 3251 TCCAGCTGCTTGCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTC 3192 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 |||||||||||| ||||| || ||||||||||| | || || ||||| ||||| || Sbjct 3191 CTGGATCTTTTGCTTCACATTCTCGATGGTGTCGCTGGGCTCGACATCGAGGGTGATGGT 3132 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||| ||||| || ||||| || || | ||||| || Sbjct 3131 CTTGCCCGTCAGGGTCTTGACGAAGATTTGCATCTT 3096 >seq13286 Length=1322 Score = 161 bits (178), Expect = 2e-34 Identities = 160/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| || |||||||| || |||||||| || |||| ||| || | || || |||||||| Sbjct 1094 GTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGCCCGTCCTCCAGCTG 1035 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || |||||||| ||||| || ||||| || || | || ||||||||||||||||| Sbjct 1034 CTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTT 975 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| |||||||| ||||| ||||| | || || ||||| ||||| || || ||||| Sbjct 974 TTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACGTCGAGCGTGATGGTTTTGCCCGT 915 Query 211091 GAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| || || | ||||| || Sbjct 914 CAGGGTCTTGACGAAGATTTGCATCTT 888 >seq5368 Length=5397 Score = 141 bits (156), Expect = 2e-28 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 ||||| |||||||||||||| || ||||| || || || |||||||| || | || ||| Sbjct 2600 CCATCCTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCC 2659 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 |||||||||||||| ||||||||||| ||||||||||| | || || ||||| ||| Sbjct 2660 TTGTCCTGGATCTTCTGTTTCACGTTCTCGATGGTGTCGCTGGGCTCCACATCGAGGGTG 2719 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| ||||| || ||||| || || | ||||| || Sbjct 2720 ATGGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCATCTT 2760 >seq10165 Length=1505 Score = 98.7 bits (108), Expect = 2e-15 Identities = 98/126 (78%), Gaps = 6/126 (5%) Strand=Plus/Plus Query 210992 TTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGT 211051 ||| |||||||| || | |||||||||||||||||||| || |||||||| ||||| || Sbjct 3 TTGCTGGTCAGGGGGTATGCCTTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGT 62 Query 211052 GTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACAC 211108 ||| ||| || || || || ||||| ||||| ||||| || ||||| || || | Sbjct 63 GTC---GCTCGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGAT 119 Query 211109 CTGCAT 211114 |||||| Sbjct 120 CTGCAT 125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158798664751715