Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq22358 154 4e-32 seq13286 154 4e-32 seq5368 120 7e-22 seq81 107 5e-18 seq51 100 7e-16 seq2663 98.7 2e-15 seq21338 95.1 3e-14 seq10165 91.5 4e-13 seq372 87.8 4e-12 >seq22358 Length=3586 Score = 154 bits (170), Expect = 4e-32 Identities = 170/225 (76%), Gaps = 1/225 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | |||||| | ||| || ||||| || ||||||| ||||| || | | || Sbjct 3320 CGCAGACGCAGGACCAAGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGCGTG 3261 Query 225553 CTCCCATCTTCTAGCTGCTT-CCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||| |||||||| || || || ||||||||||| || || Sbjct 3260 CGGCCGTCCTCCAGCTGCTTGCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCC 3201 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||||||||||||| ||||||||||| || || || || | Sbjct 3200 CTCCTTGTCCTGGATCTTTTGCTTCACATTCTCGATGGTGTCGCTGGGCTCGACATCGAG 3141 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| ||||||||||||| || || | ||| | |||||| || Sbjct 3140 GGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCATCTT 3096 >seq13286 Length=1322 Score = 154 bits (170), Expect = 4e-32 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || || | ||| || ||||| || || |||| ||||| || | | || Sbjct 1112 ACGCAGACGCAACACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGCGT 1053 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||| || || ||||||||||| |||||||| || || || ||||||||||| || || Sbjct 1052 GCGCCCGTCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCC 993 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| ||||||||||||||||| ||||| ||||| || |||||||| | Sbjct 992 CTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACGTCGAG 933 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| || |||||||||| || || | ||| | |||||| || Sbjct 932 CGTGATGGTTTTGCCCGTCAGGGTCTTGACGAAGATTTGCATCTT 888 >seq5368 Length=5397 Score = 120 bits (132), Expect = 7e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 ||||| || |||||||| || || ||||| ||||| || ||||| || || || || ||| Sbjct 2600 CCATCCTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCC 2659 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| |||||||| || ||||| ||||||||||| || ||||| || | ||| Sbjct 2660 TTGTCCTGGATCTTCTGTTTCACGTTCTCGATGGTGTCGCTGGGCTCCACATCGAGGGTG 2719 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || ||||||||||||| || || | ||| | |||||| || Sbjct 2720 ATGGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCATCTT 2760 >seq81 Length=867 Score = 107 bits (118), Expect = 5e-18 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| || ||||||||||||||||| || ||||| || || |||||||| ||||| ||||| Sbjct 396 GAAAATCTGACCATCAGTAATAGAAATTACATTGGTTGGAATATAAGCGGAAACGTCACC 337 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||| ||||| | |||||| | ||||||| || |||||||| || |||||| Sbjct 336 AGCTTGAGTTTCAATAACAGGAAGAGCTGTTAAAGAACCACCACCTAATGATTTATT 280 >seq51 Length=1678 Score = 100 bits (110), Expect = 7e-16 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| |||||| ||||||||||| ||||||||||| || || | | |||||| || || | Sbjct 1462 ATACTTCAGGGTGACCAAAAAACCAGAATAAATGCTGGTATAATACAGGATCACCACCAC 1521 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||| ||||| |||| |||||||||| |||||||||||||| Sbjct 1522 CTGCAGGATCGTAAAAAGTAGTATTAAAGTTTCTATCAGTTAA 1564 >seq2663 Length=418 Score = 98.7 bits (108), Expect = 2e-15 Identities = 75/89 (84%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 372619 TTATAGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAA 372678 || ||| || ||||||| | |||||||||||||||| |||||||||||| ||| ||||| Sbjct 221 TTTTAGTTGGCACAGAATCGGGGGTAGCGACTGTTTAGTAAAAACACAGGTCTCTGCTAA 280 Query 372679 GTTGTAAAACGATGTATAGGGTCTGACAC 372707 | |||| | ||||||||||| ||||||| Sbjct 281 TTCGTAAGAAGATGTATAGGGACTGACAC 309 >seq21338 Length=400 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||||||||| || || |||| ||||| || || | || | | || Sbjct 176 AGGACGAGGTGGAGAGTGGACTCCTTCTGGATTTTGTAGTCCGCGACTGTGCGCGTGTCC 235 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||| | || ||| | || || || ||||| |||||||| || || |||||| || Sbjct 236 TCCACCTGTTCACCCGCGTAAATGAGCCGCTGTTGATCGGGCGGGATGCCCTCCTTGACT 295 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 | |||| ||||||| || ||||||||| || | || | | | || || || Sbjct 296 TCAATCTCCTGCTTCAAAGTCCAGATGGTGTCGGAAGGATCGATATTGACTGTAATGGTT 355 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| ||||| | ||| | ||||| Sbjct 356 TTGCCAGTCAGCGTTTTGACGAAGATCTGCAT 387 >seq10165 Length=1505 Score = 91.5 bits (100), Expect = 4e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 225591 TTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGT 225650 ||| ||||| || || || ||||||||||| |||||||| |||||||| ||||| || Sbjct 3 TTGCTGGTCAGGGGGTATGCCTTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGT 62 Query 225651 GTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTG 225710 ||| | |||||||| | |||||| ||||||||||||| || || | ||| | || Sbjct 63 GTCGCTCGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTG 122 Query 225711 CAT 225713 ||| Sbjct 123 CAT 125 >seq372 Length=1041 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| ||||| ||||| || || || ||||| || || || ||||| ||||| || Sbjct 172 GAAGATTTGTCCATCTGTAATTGAAATTACGTTTGTTGGAATGTATGCAGATACATCTCC 231 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAA 4577 ||||||||||| | || |||||| ||||| | ||||||||||| Sbjct 232 CGCTTGTGTTTCAATAATAGGTAACGCTGTCATACTACCACCACCAAA 279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192167690030954