Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq17508 98.7 1e-15 >seq17508 Length=3941 Score = 98.7 bits (108), Expect = 1e-15 Identities = 341/528 (65%), Gaps = 22/528 (4%) Strand=Plus/Minus Query 76256 ATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTG 76315 ||||||||| || || | | || || | |||||| || || ||||| | | | Sbjct 2991 ATCACAAACTTAGGCAGGACGACCGAAGCCAAATTACACACAGCCACCTCCTCCGGGCTC 2932 Query 76316 GCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGG 76375 | ||| || || |||||||| || | || || || || || ||||| || ||| Sbjct 2931 GTATACTGGATAATCTCCGTACACAAGTTCGAACTGCGAATCGTCCCTAGATTCTGCTGG 2872 Query 76376 TTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGT 76435 || ||||| ||||| | ||| |||||||| | | |||| || || || || |||||| Sbjct 2871 TTACTCTTCAGATTACACGCGTCTTTATAAAGCATATACGGCGTGCCCGTCTCGATCTGT 2812 Query 76436 GATTCGATAATAGATTTCCAGACGACTCTAGC--------TTTTATTATAGATTTGTATC 76487 || || | ||| | ||| | | || || |||| || || | | | Sbjct 2811 GAGTCCAAAATCGCGAACCACAGGTCTTGCGCACGCACGGTTTTCTT---GACTCTTCCC 2755 Query 76488 GCTTCTCTCTTTCATATTGT--GTATATAACCGTTCAAATTCATCTCCCCAAACA-TCAT 76544 |||| |||||||||| ||| | || || || | | | || || || Sbjct 2754 GCTT-----TTTCATATTGCAGGTACAGGGCC--TCGAACGCCT-TGCCATGGCAGTCGC 2703 Query 76545 CCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTT 76604 |||| ||||| |||| || ||||||||||| |||||| | ||||| |||| |||| | Sbjct 2702 CCAAGCCAGGGCATTGATCGGGACACATCAACGACCACACCCCATCCTCCTCCACCCTCT 2643 Query 76605 TCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCAT 76664 ||||||| | |||||| ||||| || || || ||||| || | | ||||| | Sbjct 2642 TCATAAACAAATCAGGGATCCACAGCCCATAGAACAGATCACGCGCCCGCGCCTCTTCCT 2583 Query 76665 TTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGAT 76724 | || ||| || | | || || | ||| | |||||| | |||||| || || | | Sbjct 2582 TCCCATGATTTTTCCTCAAGTCAAGCACCTCAAAAATATCCGCATGCCACGGCTCAATGT 2523 Query 76725 ATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATC 76772 | ||||| | | ||||| || || || |||||||| | ||||| Sbjct 2522 AAATCGCAAAGGCCCCCGGCCGCTTCCCCCCGCCCTGATCAACATATC 2475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712722382221120