Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_031077.1 Length=41760 Score E Sequences producing significant alignments: (Bits) Value seq2514 140 9e-29 >seq2514 Length=426 Score = 140 bits (154), Expect = 9e-29 Identities = 176/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 1268 GAGGTTGCCGAGGGTGCGCTGACGGACGAGGACACCGAAATCATCTGGGTGGCGTTCGGT 1327 ||||| || || || || ||||| ||||| ||||| | || || ||| | ||||| Sbjct 1 GAGGTGGCAGAAGGCGCCCTGACTGACGAAGACACAGTGATTATATGGATATGCTTCGGG 60 Query 1328 AACCCGACGCGTAACACCGGGCGTTTCCGCGAGTGCTTCCGCAAATACCGGCATCGCTGG 1387 ||||| |||| ||| | || || ||| | ||||||||| | || | || ||| | ||| Sbjct 61 AACCCCACGCAGAACTCAGGTCGCTTCAGAGAGTGCTTCAGGAAGTTTCGACATAGGTGG 120 Query 1388 AAGTGCGCGCAGATTGACAGCCGCACCGTTGAGGGCACCAACAAAGAGCAACTGCAAAAG 1447 | | ||| || ||||| || || || || |||||||||||||| || || | | Sbjct 121 ATACACAAGCATATCGACAGTCGTACGGTCGAAGGCACCAACAAAGAACAGCTCGATAGA 180 Query 1448 TGGGTGGACGACTACGGCGAAGACAGCGACTTCGTGAAGGTGCGTGTACGCGGCATCTTC 1507 ||| || ||||| |||||||||||||| |||| || || |||||||||||||| ||| Sbjct 181 ATGGTTGAAGACTATGGCGAAGACAGCGATATCGTCAAAGTACGTGTACGCGGCATATTC 240 Query 1508 CC 1509 || Sbjct 241 CC 242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133472680892124