Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq566 544 1e-149 seq288 369 5e-97 seq620 224 1e-53 seq49 152 6e-32 >seq566 Length=2184 Score = 544 bits (602), Expect = 1e-149 Identities = 729/1009 (72%), Gaps = 4/1009 (0%) Strand=Plus/Plus Query 185973 GATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTTTT 186032 ||||||||| | ||||| || || || || ||| | || ||||| || | || || || Sbjct 604 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGCCTT-TTATTATT 662 Query 186033 CCCA-CTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCTG 186091 |||| | || | | | ||| ||||||| ||| | || || || || |||||||| || Sbjct 663 CCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCTTG 722 Query 186092 GTATACCCACGGGTTGGCGTCTTCTTACCTTG-AGGGTGCTAATTTTCTCACGGCAGCAG 186150 |||||| || || || || ||||||||||| | ||| ||| || || | || | ||| | Sbjct 723 GTATACACATGGATTAGCATCTTCTTACCTAGAAGGATGC-AACTTCTTAACTGTAGCGG 781 Query 186151 TGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 186210 | ||||| ||||| || |||||||||||| | || || | ||||| ||||| | | Sbjct 782 TATCAACACCTGCAAACAGTATGGGTCATTCCTTAATTTTATTATGGGGACCTGAAGCAC 841 Query 186211 AAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 186270 |||||||| ||| || ||| | ||| |||| ||| | ||| |||| | || | || | Sbjct 842 AAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATCGCATTACATG 901 Query 186271 GAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCGTCTCGTAGGTA 186330 | || |||| | | || || ||| | || || || || ||| |||||| ||||||| Sbjct 902 GTGCATTTGGTTTAATTGGATTCTGTTTACGTCAATTCGAGATCGCTCGTCTTGTAGGTA 961 Query 186331 TCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTCC 186390 | |||||||| || || ||||| || ||||| ||||| || || || ||| ||||||| Sbjct 962 TTCGTCCATATAACGCAATTGCATTCTCTGGACCTATTGCGGTATTCGTTTCTGTATTCT 1021 Query 186391 TCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCAA 186450 | ||||| ||||| ||||| | |||||||||||||| ||||| || ||||| | Sbjct 1022 TAATCTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGCTA 1081 Query 186451 TCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCACA 186510 | || | ||| | || ||| | ||||| ||||| |||||||| | || |||||||| | Sbjct 1082 TTTTCCGCTTCTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAACCCATTCCATA 1141 Query 186511 TGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACTG 186570 ||||||| |||||||| || | |||||||| | | || ||||| ||||| | ||||| Sbjct 1142 TGATGGGCGTAGCAGGGATTTTAGGTGGTGCATTATTATCTGCAATTCATGGAGCTACTG 1201 Query 186571 TAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATACGA 186630 ||||||| || || | ||||||||| || |||||||||||| || || | | Sbjct 1202 TAGAAAACACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTTTACACCAA 1261 Query 186631 CGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTTCG 186690 | ||| ||||||||| ||||| ||||| || ||||| ||||||||||| || || |||| Sbjct 1262 CACAATCAGAAGAAACTTATTCAATGGTAACAGCGAATAGATTCTGGTCTCAAATTTTCG 1321 Query 186691 GAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTATGG 186750 | | || || || || ||||||||||| ||||||||| | |||||||| || | | Sbjct 1322 GTGTAGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATTTGTTCCAGTAACAG 1381 Query 186751 GTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATGACT 186810 || | ||||| ||| |||| ||| | ||| | || | || | | || || |||| Sbjct 1382 GTTTATGGACAAGTTCTTTTGGTATTGTAGGTTTAGCATTAAATTTAAGAGCATACGACT 1441 Query 186811 TTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGA 186870 | ||| ||| || | | ||||| || ||||| || || || || ||||| || || | Sbjct 1442 TCGTATCTCAAGAACTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAA 1501 Query 186871 ATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACATGAAA 186930 ||||| |||| || |||||| | | | |||||||| || || ||||||||||||| Sbjct 1502 ATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAAGACCAACCACATGAAA 1561 Query 186931 ACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCTGTGATA 186979 |||||||||| || || || || || ||| | || ||||| || | ||| Sbjct 1562 ACTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAATA 1610 >seq288 Length=849 Score = 369 bits (408), Expect = 5e-97 Identities = 426/574 (74%), Gaps = 0/574 (0%) Strand=Plus/Plus Query 183187 TGGGAATCCTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTT 183246 ||||| ||||||| ||||| || ||||| | ||||| | || | |||||||| Sbjct 276 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 335 Query 183247 GGCACACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGCTTCATCGTTGCCTTCGTC 183306 || | ||||| ||||| | || |||| || | |||||||||| | || || || Sbjct 336 GGTGTTTTAATGATCCCAACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTTATC 395 Query 183307 GCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTAT 183366 ||||| ||||| || || |||||||| ||||| ||||| |||||||| || || | || Sbjct 396 GCTGCACCTCCAGTTGATATCGACGGTATCCGTGAACCAGTTGCTGGATCACTTTTATAC 455 Query 183367 GGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTC 183426 ||||||||||||||| ||||||||||| ||||| ||| ||| | || || |||||||| Sbjct 456 GGAAACAACATCATCACTGGTGCAGTTATTCCTAGTTCTAACTCTATCGGTATTCACTTC 515 Query 183427 TATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAA 183486 || || | |||||||| || || | || |||||||| || |||||||||||||||||| Sbjct 516 TACCCAGTTTGGGAAGCTGCGTCTTTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAA 575 Query 183487 CTCGTAGTCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTG 183546 || ||||| || |||||| | | || || ||||||||||| ||||| |||||| | Sbjct 576 CTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTT 635 Query 183547 TCTTACCGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCT 183606 |||||| | || |||||||||||||| | || |||| || || || ||||| Sbjct 636 AGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCA 695 Query 183607 GCAACCGCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCC 183666 ||| | || || ||| | || || || |||| |||||| || |||||||||||| Sbjct 696 GCATCTGCAGTATTCTTAGTTTACCCAATCGGACAAGGTAGCTTCTCTGATGGTATGCCT 755 Query 183667 CTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTG 183726 | ||||| ||| || || |||| ||| | || ||||||||||| |||||||| || Sbjct 756 TTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTT 815 Query 183727 ATGCACCCCTTCCACATGCTGGGTGTCGCTGGTG 183760 |||||||| ||||| ||| ||||| ||||||| Sbjct 816 ATGCACCCATTCCATATGGCTGGTGTTGCTGGTG 849 >seq620 Length=282 Score = 224 bits (248), Expect = 1e-53 Identities = 222/284 (78%), Gaps = 6/284 (2%) Strand=Plus/Plus Query 183763 TTCGGTGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGT 183822 || ||||| ||| | |||||||| |||||||||||||| || || || | | ||| Sbjct 2 TTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGT 61 Query 183823 GAAACCACTGA-GTCTGAGTCACAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAG 183879 ||||| ||| | | | || | | ||||| |||||||| ||||| ||||||||||| Sbjct 62 GAAAC---TGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAA 118 Query 183880 ACCTACAACATTGTCGCTGCTCATGGATACTTTGGTCGTCTGATCTTCCAGTATGCTTCG 183939 || |||||||| || ||||| || || |||||||| ||| | |||||||| || || Sbjct 119 ACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGT 178 Query 183940 TTTAACAATTCTCGTTCTCTTCACTTCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGG 183999 || ||||| |||||| || | ||||||||| | |||||||||||||| || || |||||| Sbjct 179 TTCAACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGG 238 Query 184000 TTTACTGCTCTTGGTGTTAGCACTATGGCATTTAACCTGAATGG 184043 || ||||||||||||||||| ||||||||||| ||| | ||||| Sbjct 239 TTAACTGCTCTTGGTGTTAGTACTATGGCATTCAACTTAAATGG 282 >seq49 Length=2147 Score = 152 bits (168), Expect = 6e-32 Identities = 129/159 (81%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 184014 TGTTAGCACTATGGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGG 184073 |||||| ||||||||||| ||| | |||||||| ||||||||||| || | ||||| | Sbjct 2147 TGTTAGTACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAG 2088 Query 184074 TCAAGGTCGTGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGA 184133 ||||| || || | ||||| ||||| ||| || |||||||||||| | | || ||||| Sbjct 2087 CCAAGGCCGCGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGA 2028 Query 184134 AGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGA 184172 ||| |||||||| ||||| || |||||||||||||| || Sbjct 2027 AGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGA 1989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621885404038920