Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq566 562 3e-155 seq288 398 8e-106 seq620 208 8e-49 seq49 152 6e-32 >seq566 Length=2184 Score = 562 bits (622), Expect = 3e-155 Identities = 734/1008 (73%), Gaps = 6/1008 (1%) Strand=Plus/Plus Query 165165 GACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 165224 || |||||| | ||| |||| |||||||| ||| |||| ||||| || ||| || || || Sbjct 604 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGCCTT-TTATTATT 662 Query 165225 CCCA-CTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTG 165283 |||| | || | |||||| |||| || ||| | || || || ||||| || || ||| Sbjct 663 CCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCTTG 722 Query 165284 GTATACTCACGGACTTGCGAGTTCCTATCTTGAGGG-TGCAAACTTTCTTACTGCGGCAG 165342 |||||| || ||| | || ||| || || || || ||||| ||| | |||| || | Sbjct 723 GTATACACATGGATTAGCATCTTCTTACCTAGAAGGATGCAA-CTTCTTAACTGTAGCGG 781 Query 165343 TTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTC 165402 | || || || ||| || |||||||||||| | | | ||||||| ||||| | | Sbjct 782 TATCAACACCTGCAAACAGTATGGGTCATTCCTTAATTTTATTATGGGGACCTGAAGCAC 841 Query 165403 AAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACG 165462 |||| || |||| || ||| ||| |||| ||| | ||| ||||| | || | || | Sbjct 842 AAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATCGCATTACATG 901 Query 165463 GAGCCTTTGCACTTATAGGTTTCATGCTT-CGCCAGTTTGAACTGGCACGACTTATCGGT 165521 | || |||| | || || ||| || || || || || || | || || ||| | ||| Sbjct 902 GTGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTCGAGATCGCTCGTCTTGTAGGT 960 Query 165522 ATTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTT 165581 |||||||| || || || ||||| |||||||| |||||||| ||||||||| ||| || Sbjct 961 ATTCGTCCATATAACGCAATTGCATTCTCTGGACCTATTGCGGTATTCGTTTCTGTATTC 1020 Query 165582 CTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCA 165641 | || |||||||| |||||| | ||||||||||| || || ||||| ||||| Sbjct 1021 TTAATCTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGCT 1080 Query 165642 ATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCAC 165701 || ||||| ||| | | ||| | ||||| |||||||||||||| || || || || || Sbjct 1081 ATTTTCCGCTTCTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAACCCATTCCAT 1140 Query 165702 ATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACA 165761 ||||||||||||||||| || ||||| || ||||| | ||||| |||||||| | ||| Sbjct 1141 ATGATGGGCGTAGCAGGGATTTTAGGTGGTGCATTATTATCTGCAATTCATGGAGCTACT 1200 Query 165762 GTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGT 165821 ||||| || || | | |||||||||||| |||||||| ||| || ||| Sbjct 1201 GTAGAAAACACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTTTACACCA 1260 Query 165822 ACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTT 165881 || || ||| ||||||||||| ||||| || || || | ||||||||||| ||||| Sbjct 1261 ACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAATAGATTCTGGTCTCAAATTTTC 1320 Query 165882 GGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATG 165941 ||| | |||||| || || ||||||||||||||||| ||| | |||||||| || | Sbjct 1321 GGTGTAGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATTTGTTCCAGTAACA 1380 Query 165942 GGACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGAT 166001 || | |||||||||||| ||||||| | ||| | ||| | ||| | | || || || Sbjct 1381 GGTTTATGGACAAGTTCTTTTGGTATTGTAGGTTTAGCATTAAATTTAAGAGCATACGAC 1440 Query 166002 TTTGTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAA 166061 || || ||||| || || | || ||||| |||||||| |||||||| ||||| || ||| Sbjct 1441 TTCGTATCTCAAGAACTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAA 1500 Query 166062 AACATCCTCCTTAATGAAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAG 166121 || ||| | | || ||||| | | | ||| |||| | ||||||||| ||||| Sbjct 1501 AATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAAGACCAACCACATGAA 1560 Query 166122 AACTTTGTGTTCCCTGAAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 |||||||| ||||| || || || || ||| | || ||||| |||||| Sbjct 1561 AACTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAA 1608 >seq288 Length=849 Score = 398 bits (440), Expect = 8e-106 Identities = 418/546 (77%), Gaps = 4/546 (1%) Strand=Plus/Plus Query 163949 ACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTGATGATTCCCTGCCTGCTGGCA 164008 || || || ||||| || ||||||||||||| || | ||||| || | | || Sbjct 306 ACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACA 365 Query 164009 GCGACTACATGTTTCATCATCGCCTTCATCGGTGCTCCTCCTGTGGACATCGATGGCATC 164068 || || | || ||||||||||| || |||| ||| ||||| || || ||||| || ||| Sbjct 366 GCTACAAGCTGCTTCATCATCGCTTTTATCGCTGCACCTCCAGTTGATATCGACGGTATC 425 Query 164069 CGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATC 164128 || ||||| || ||||| || || | || ||||||||||||||| ||||||| ||||| Sbjct 426 CGTGAACCAGTTGCTGGATCACTTTTATACGGAAACAACATCATCACTGGTGCAGTTATT 485 Query 164129 CCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGAC 164188 ||| ||||||| |||||||| | ||||||||||| | |||||||| || | | ||| Sbjct 486 CCTAGTTCTAACTCTATCGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTTTAGAC 545 Query 164189 GAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCTGATTG--GCA 164246 || ||||| |||||||||||||||| |||||| || || || |||||| | | | | | Sbjct 546 GAGTGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTA 605 Query 164247 TCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGA 164306 || ||| |||||||| ||||| ||||||||| |||||| | || ||||||||||||| Sbjct 606 GCT-TGC-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGA 663 Query 164307 TTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTT 164366 ||| |||||| | ||| ||||| || |||||||| |||||| ||| | || || || Sbjct 664 TTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAA 723 Query 164367 TCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACTACA 164426 |||| |||||| |||||||||| |||||| | || || ||||| || ||||||| || Sbjct 724 TCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCA 783 Query 164427 TGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAG 164486 |||| || ||||| || || |||||||| || |||||||| ||||||||| || || | Sbjct 784 TGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTG 843 Query 164487 CAGGTG 164492 | |||| Sbjct 844 CTGGTG 849 >seq620 Length=282 Score = 208 bits (230), Expect = 8e-49 Identities = 219/285 (77%), Gaps = 6/285 (2%) Strand=Plus/Plus Query 164494 GTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACTTCTTCGCTGGTTCG 164553 |||||| || ||| | |||||||| ||||||||||| || || || ||| | | || Sbjct 1 GTTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCG 60 Query 164554 TGAGACCACCGAAAATGA-GTCCCAG--AACTATGGTTACAAGTTTGGTCAGGAAGAAGA 164610 ||| || ||| | | || | | ||||| |||||||| || || || |||||||| Sbjct 61 TGAAACT---GAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGA 117 Query 164611 AACCTACAACATCGTTGCCGCTCACGGTTACTTTGGTCGTCTGATTTTCCAATACGCTTC 164670 ||| ||||||||||| || || |||||||||||||| ||| | || ||||||||||| Sbjct 118 AACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAG 177 Query 164671 CTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTG 164730 ||||||||||| ||| | | ||||||||| | || || ||||| ||||| |||||||| Sbjct 178 TTTCAACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTG 237 Query 164731 GTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAACCTCAACGG 164775 ||| |||||||| || ||||| || |||||||||||| | || || Sbjct 238 GTTAACTGCTCTTGGTGTTAGTACTATGGCATTCAACTTAAATGG 282 >seq49 Length=2147 Score = 152 bits (168), Expect = 6e-32 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 164747 GTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGT 164806 ||||| || |||||||||||| | || ||||||||||||||||| || | | ||| | Sbjct 2146 GTTAGTACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAGC 2087 Query 164807 CAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAA 164866 || || || ||| ||||||| ||||| ||| || |||||||||||| | | || |||||| Sbjct 2086 CAAGGCCGCGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAA 2027 Query 164867 GTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGAGAACACT 164926 || |||||||| ||||| || |||||||||||||| || | || | || | | Sbjct 2026 GTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGATTTAGCCGTATCTAATGTTCTT 1967 Query 164927 CCTGTTGCTCTCAAGGCACCTGCTGTT 164953 |||||||| | || || ||||||||| Sbjct 1966 CCTGTTGCATTAAACGCTCCTGCTGTT 1940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557488560552120