Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq22358 111 4e-19 seq13286 107 4e-18 >seq22358 Length=3586 Score = 111 bits (122), Expect = 4e-19 Identities = 156/217 (72%), Gaps = 3/217 (1%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | || || || ||||| |||||||||||||| || | | || | || || Sbjct 3311 AGGACCAAGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCC 3252 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || || || ||| |||||||| || | ||||||||| | || ||| || ||||| | Sbjct 3251 TCCAGCTGC-TTGCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGT 3193 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || ||||| || ||| |||| | | |||| ||| || || || || || | Sbjct 3192 CCTGGATCTTTTGCTTCACATTCTCGATGGTGTCGCTGGGCTCGACATCGAGGGTGATGG 3133 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | |||||||| || ||||| ||||||| ||||| || Sbjct 3132 TCTTGCCCGTCAGGGTCTTGACGAAGATTTGCATCTT 3096 >seq13286 Length=1322 Score = 107 bits (118), Expect = 4e-18 Identities = 151/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| || ||||||||||| || | | || | ||| || || | Sbjct 1097 CAAG-TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGCCCGTCCTCCA 1039 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||||| |||||||| || | ||||||||| | || ||| || ||||| || || | Sbjct 1038 GCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGA 979 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||||| || || |||| | |||| ||| || || || || || ||||||| Sbjct 978 TCTTTTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACGTCGAGCGTGATGGTTTTGC 919 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 |||| || ||||| ||||||| ||||| || Sbjct 918 CCGTCAGGGTCTTGACGAAGATTTGCATCTT 888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153469089819761