Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq566 590 7e-164 seq288 405 6e-108 seq620 228 1e-54 seq49 154 2e-32 seq60 96.9 4e-15 >seq566 Length=2184 Score = 590 bits (654), Expect = 7e-164 Identities = 751/1031 (73%), Gaps = 2/1031 (0%) Strand=Plus/Plus Query 178828 AAAGGGGGTGGTTTGATGTACTCGATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGTTG 178887 |||| || | ||||| || ||||||||||| | || || ||||| ||||| ||| ||| Sbjct 581 AAAGAGGTTTATTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTATTTATTG 640 Query 178888 GTTGGTCAGGTCTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGG 178947 |||||||||| ||| | | ||||| || || | | ||| | || || ||| | || | Sbjct 641 GTTGGTCAGGCCTTTTATTATTCCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAG 700 Query 178948 GCACAACATTCGTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGAT 179007 | || || || || || || |||||||| || || | || ||||| || || || |||| Sbjct 701 GTACGACTTTTGTTACATCTTGGTATACACATGGATTAGCATCTTCTTACCTAGAAGGAT 760 Query 179008 GTAATTTCCTTACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTC 179067 | || ||| | |||| || |||||||| ||||| || | | || |||||| || || Sbjct 761 GCAACTTCTTAACTGTAGCGGTATCAACACCTGCAAACAGTATGGGTCATTCCTTAATTT 820 Query 179068 TTCTATGGGGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTAT 179127 | ||||||| || ||||| || ||||||||| || ||||| ||| |||| ||| ||| Sbjct 821 TATTATGGGGACCTGAAGCACAAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTAT 880 Query 179128 GGCCTTTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTT-CGGCAGTTT 179186 || ||||| | || | || ||||| || | | | || || ||| || || || || || Sbjct 881 GGGCTTTTATCGCATTACATGGTGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTC 939 Query 179187 GAAATCGCACGTCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATT 179246 || ||||| ||||| || ||||||||||| || || ||||| || || ||||| || ||| Sbjct 940 GAGATCGCTCGTCTTGTAGGTATTCGTCCATATAACGCAATTGCATTCTCTGGACCTATT 999 Query 179247 GCTGTCTTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCG 179306 || || || || ||||| || | || |||||||| ||||| | |||||||| || Sbjct 1000 GCGGTATTCGTTTCTGTATTCTTAATCTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCT 1059 Query 179307 CCGTCGTTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAAC 179366 || ||||| |||||||| |||||||||||| || | ||| |||| || ||||| ||| Sbjct 1060 CCAAGTTTTGGGGTTGCAGCTATTTTCCGCTTCTTATTATTCTTACAAGGTTTCCATAAC 1119 Query 179367 TGGACGCTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTT 179426 ||||| || ||||| ||||| |||||||| |||||||| || | || || ||||| | Sbjct 1120 TGGACACTTAACCCATTCCATATGATGGGCGTAGCAGGGATTTTAGGTGGTGCATTATTA 1179 Query 179427 TGTGCCATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAAT 179486 | ||| |||||||| ||||| ||||| |||||||| |||||||| |||| |||| Sbjct 1180 TCTGCAATTCATGGAGCTACTGTAGAAAACACACTATTTGAAGATGGTGATGCTGCAAAC 1239 Query 179487 ACATTCAAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAAC 179546 |||||| || || || |||||| ||| || || ||||| ||||| || || || Sbjct 1240 ACATTCCGTGCGTTTACACCAACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAAT 1299 Query 179547 CGTTTCTGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTT 179606 | ||||||||||| || || ||| | || ||| || || |||||||| || ||||| Sbjct 1300 AGATTCTGGTCTCAAATTTTCGGTGTAGCTTTCTCTAACAAACGTTGGCTTCACTTCTTC 1359 Query 179607 ATGTTGTTTGTTCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCA 179666 ||||| |||||||| || | ||| | ||||| | |||||||| | ||| | ||| Sbjct 1360 ATGTTATTTGTTCCAGTAACAGGTTTATGGACAAGTTCTTTTGGTATTGTAGGTTTAGCA 1419 Query 179667 CTTAACCTTAGAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAG 179726 | || | ||||| || ||||| || || ||||| | | || || || ||||| || Sbjct 1420 TTAAATTTAAGAGCATACGACTTCGTATCTCAAGAACTTCGTGCAGCTGAAGATCCAGAA 1479 Query 179727 TTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCA 179786 || || || ||||| || || || ||| |||| || |||||| | | | |||||||| Sbjct 1480 TTTGAAACTTTCTACACTAAAAATATCTTATTAAACGAAGGTATTAGATCATGGATGGCC 1539 Query 179787 CCAGTCGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAAC 179846 || || ||||||||||||||||||||||| || || || || || ||| | || ||| Sbjct 1540 GCACAAGACCAACCACATGAAAACTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAAC 1599 Query 179847 GCTCTGTGATA 179857 || || | ||| Sbjct 1600 GCCCTTTAATA 1610 >seq288 Length=849 Score = 405 bits (448), Expect = 6e-108 Identities = 416/540 (77%), Gaps = 4/540 (1%) Strand=Plus/Plus Query 177625 AATCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTGCTCGCTGCTGCT 177684 || ||| | || |||||||||||||||| | |||||||| || | | | ||| | Sbjct 312 AACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCTACA 371 Query 177685 ATCTGTTTCATCGTCGCTTTCGTCGCTGCTCCTCCTGTGGACATCGACGGCATCCGTGAA 177744 | ||| |||||| ||||||| ||||||| ||||| || || |||||||| ||||||||| Sbjct 372 AGCTGCTTCATCATCGCTTTTATCGCTGCACCTCCAGTTGATATCGACGGTATCCGTGAA 431 Query 177745 CCCGTCGCTGGTTCCCTGATGTATGGCAACAACATCATTTCTGGTGCTGTTGTTCCTTCT 177804 || || ||||| || || | || || ||||||||||| ||||||| ||| ||||| | Sbjct 432 CCAGTTGCTGGATCACTTTTATACGGAAACAACATCATCACTGGTGCAGTTATTCCTAGT 491 Query 177805 TCTAACGCTATTGGTCTCCACTTCTATCCCATCTGGGAAGCAGCTTCTCTCGATGAGTGG 177864 |||||| |||| ||| | |||||||| || | |||||||| || ||| | || |||||| Sbjct 492 TCTAACTCTATCGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTTTAGACGAGTGG 551 Query 177865 CTCTACAATGGTGGTCCTTTCCAACTCGTTATCTTCCACTTCCTGATCG--GTATCTATG 177922 || ||||| |||||||||| |||||| || | || |||||| | | | ||| || || Sbjct 552 CTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCT-TG 610 Query 177923 CATACATGGGTCGTGAGTGGGAACTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTG 177982 | |||||||| ||||| ||||||||| ||||| |||| |||||||| ||||| | | Sbjct 611 C-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCG 669 Query 177983 TAGCATACTCTGCTCCAGTCGCCGCAGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTC 178042 |||| | ||| |||||||| || ||||||||||| |||||| | ||||| || |||| | Sbjct 670 TAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATCGGAC 729 Query 178043 AAGGTTCTTTCTCTGACGCTATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTG 178102 ||||| |||||||| | |||||| | ||||| ||| || ||||||| |||| | | Sbjct 730 AAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAG 789 Query 178103 TCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTG 178162 | ||||||||||| |||||||| || |||||||| ||||| ||| || || ||||||| Sbjct 790 TATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTG 849 >seq620 Length=282 Score = 228 bits (252), Expect = 1e-54 Identities = 219/281 (78%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 178165 TTTGGTGGTTCTCTGTTCAGTGCGATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGT 178224 |||||||| ||| | |||||||| |||||||||||||| || || || | | ||| Sbjct 2 TTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGT 61 Query 178225 GAAACCACCGAGAACGAAAGTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACC 178284 ||||| || || | | ||||| |||||||| ||||| ||||||||||| || Sbjct 62 GAAACTGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAAACT 121 Query 178285 TACAACATCGTTGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTC 178344 ||||||||||| ||||| || |||||||| || || | |||||||||||||| ||| Sbjct 122 TACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGTTTC 181 Query 178345 AACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTC 178404 |||||||| ||| | | ||||||||| | || || ||||| ||||| ||||||||||| Sbjct 182 AACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTTA 241 Query 178405 ACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGG 178445 ||||||||||||||||| || |||||||||||| | || || Sbjct 242 ACTGCTCTTGGTGTTAGTACTATGGCATTCAACTTAAATGG 282 >seq49 Length=2147 Score = 154 bits (170), Expect = 2e-32 Identities = 161/209 (77%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 178416 TGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAG 178475 |||||| || |||||||||||| | || ||||||||||||||||| || | | ||||| Sbjct 2147 TGTTAGTACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAG 2088 Query 178476 TCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGA 178535 || ||| || | ||||| ||||| ||| || |||||||||||| | | |||||||| Sbjct 2087 CCAAGGCCGCGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGA 2028 Query 178536 AGTCATGCACGAGCGTAATGCTCACAACTTCCCTCTTGACCTCGCTGCTGCTGAAAGCAC 178595 ||| |||||||| ||||| || |||||||||||||| || | || | || || | | Sbjct 2027 AGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGATTTAGCCGTATCT-AATGTTC 1969 Query 178596 -TCCTGTTGCTCTCACCGCACCTGCTGTT 178623 ||||||||| | | ||| ||||||||| Sbjct 1968 TTCCTGTTGCATTAAACGCTCCTGCTGTT 1940 >seq60 Length=5343 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 18367 TAGGGTAGGTGTCCGAGTGGTTAATGGAGGCGGACTGTAAATCCGCTGGCTCTGCCTACG 18426 |||||| | || |||||||||||| || |||||||||||||||||||||||| ||||||| Sbjct 2187 TAGGGTCGATGCCCGAGTGGTTAAAGGGGGCGGACTGTAAATCCGCTGGCTCAGCCTACG 2246 Query 18427 GGGGTTCAAATCC 18439 ||||||||||| Sbjct 2247 TTGGTTCAAATCC 2259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596129865692560