Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq566 594 6e-165 seq288 347 1e-90 seq620 203 4e-47 seq49 143 3e-29 >seq566 Length=2184 Score = 594 bits (658), Expect = 6e-165 Identities = 744/1010 (74%), Gaps = 8/1010 (1%) Strand=Plus/Plus Query 170607 GATGACTGGCTTAAACGTGATCGGTTTGTATTTGTGGGCTGGTCTGGACTTCTTCTTTTT 170666 ||||||||| | ||||| ||||| || |||||| | || ||||| || ||| || || || Sbjct 604 GATGACTGGTTAAAACGAGATCGTTTCGTATTTATTGGTTGGTCAGGCCTT-TTATTATT 662 Query 170667 CCCA-CTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACGACATTTGTTACAAGTTG 170725 |||| | || | ||||||| |||| || ||| | || || ||||| ||||||||| ||| Sbjct 663 CCCAACAGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCTTG 722 Query 170726 GTACACCCACGGACTTGCAAGTTCGTACCTTGAAGG-TGCTAATTTCCTTACAGCGGCTG 170784 ||| || || ||| | ||| ||| ||||| ||||| ||| || ||| | || | || | Sbjct 723 GTATACACATGGATTAGCATCTTCTTACCTAGAAGGATGC-AACTTCTTAACTGTAGCGG 781 Query 170785 TGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 170844 | ||||| ||||| | |||||||||||| | || || | ||||| ||||| | | Sbjct 782 TATCAACACCTGCAAACAGTATGGGTCATTCCTTAATTTTATTATGGGGACCTGAAGCAC 841 Query 170845 AGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 170904 | || |||||| || ||| | ||| |||| ||| | ||| |||| | || | || | Sbjct 842 AAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATCGCATTACATG 901 Query 170905 GAGCCTTTGCTCTCATAGGTTTCATGCTT-CGGCAGTTTGAAATCAGTCGTCTCGTAGGG 170963 | || |||| | | || || ||| || || || || || || ||| |||||| ||||| Sbjct 902 GTGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTCGAGATCGCTCGTCTTGTAGGT 960 Query 170964 ATTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTC 171023 ||| | || || || ||||| || |||||||| ||||| || || || || || ||| Sbjct 961 ATTCGTCCATATAACGCAATTGCATTCTCTGGACCTATTGCGGTATTCGTTTCTGTATTC 1020 Query 171024 CTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCA 171083 | ||||||||||| || || |||||||||||||||| || ||||| |||||||| Sbjct 1021 TTAATCTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGCT 1080 Query 171084 ATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCAT 171143 || ||||||||| | | ||| | ||||||||||| ||||||||||| || ||||| ||| Sbjct 1081 ATTTTCCGCTTCTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAACCCATTCCAT 1140 Query 171144 ATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTACA 171203 |||||||| || ||||| || | || |||||||| | |||||||||||||| | ||| Sbjct 1141 ATGATGGGCGTAGCAGGGATTTTAGGTGGTGCATTATTATCTGCAATTCATGGAGCTACT 1200 Query 171204 GTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACA-C 171262 ||||| || || | | ||||||||||||| |||||||| || || ||| ||| | Sbjct 1201 GTAGAAAACACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTTT-ACACC 1259 Query 171263 GACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTT 171322 || || ||||| || ||||| ||||| || || ||| | |||||||| || ||||| Sbjct 1260 AACACAATCAGAAGAAACTTATTCAATGGTAACAGCGAATAGATTCTGGTCTCAAATTTT 1319 Query 171323 TGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCAT 171382 ||| | || ||| || || |||||| | || ||||| ||| | |||||||| || | Sbjct 1320 CGGTGTAGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATTTGTTCCAGTAAC 1379 Query 171383 GGGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAATCTTAGGGCTTATGA 171442 ||| | ||| ||| | | || ||| | ||| | || | ||| | || || || || Sbjct 1380 AGGTTTATGGACAAGTTCTTTTGGTATTGTAGGTTTAGCATTAAATTTAAGAGCATACGA 1439 Query 171443 TTTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCAA 171502 |||||| ||| || | | ||||| ||||||||||| || || || ||||| || || Sbjct 1440 CTTCGTATCTCAAGAACTTCGTGCAGCTGAAGATCCAGAATTTGAAACTTTCTACACTAA 1499 Query 171503 GAACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCACCAGTAGACCAACCACATGA 171562 || ||| |||| || |||||| || | |||||||||| || ||||||||||||||| Sbjct 1500 AAATATCTTATTAAACGAAGGTATTAGATCATGGATGGCCGCACAAGACCAACCACATGA 1559 Query 171563 AAACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGCAATGCACTTTGAT 171612 ||||||||| ||||||||||| ||| |||| ||||| || || |||| || Sbjct 1560 AAACTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAAT 1609 >seq288 Length=849 Score = 347 bits (384), Expect = 1e-90 Identities = 406/545 (74%), Gaps = 4/545 (1%) Strand=Plus/Plus Query 169372 CACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTGATGATCCCCTGCCTGCTGGC 169431 ||| || |||||| | || ||||||||||||| || | |||||||| | | | Sbjct 305 CACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAAC 364 Query 169432 AGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCCCCTGTGGACATCGACGGCAT 169491 ||| || | || ||||||||||| || |||| ||| || || || || |||||||| || Sbjct 365 AGCTACAAGCTGCTTCATCATCGCTTTTATCGCTGCACCTCCAGTTGATATCGACGGTAT 424 Query 169492 CCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGTGCTGTTGT 169551 ||| ||||| |||||||| || || | || || |||||||||||| ||||||| ||| | Sbjct 425 CCGTGAACCAGTTGCTGGATCACTTTTATACGGAAACAACATCATCACTGGTGCAGTTAT 484 Query 169552 GCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAAGTCTCGA 169611 || ||| ||| | |||||| |||||||||| || | |||||||| || | | || Sbjct 485 TCCTAGTTCTAACTCTATCGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTTTAGA 544 Query 169612 TGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTCATCG--GC 169669 || ||| | |||||||||||||||| |||||| || || || |||||| | | | | Sbjct 545 CGAGTGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGT 604 Query 169670 ATCTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATCGTCTGGGTATGCGCCCTTGG 169729 | || ||| |||||||| ||||| |||||| | ||| ||| | || ||||| |||||| Sbjct 605 AGCT-TGC-TACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGG 662 Query 169730 ATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCG 169789 || | || |||| ||| ||||| || || ||||| || || || ||| | || ||||| Sbjct 663 ATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCA 722 Query 169790 TTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTTAACTAC 169849 | || ||||| |||||||| | ||||||| | ||||| || || || || |||| | Sbjct 723 ATCGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTC 782 Query 169850 ATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACCCCTTCCACATGCTTGGTGTT 169909 ||| | || |||||||| || |||||||| || |||||||| ||||| ||| ||||||| Sbjct 783 ATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTT 842 Query 169910 GCGGG 169914 || || Sbjct 843 GCTGG 847 >seq620 Length=282 Score = 203 bits (224), Expect = 4e-47 Identities = 214/282 (76%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 169918 GTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGTAGCCTCGTCACTTCGAGTCTTGTCCG 169977 ||||||||||||| | || || || ||||||||| || || || || ||| | |||| Sbjct 1 GTTTGGTGGGTCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCG 60 Query 169978 TGAAACCACCGAGAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGAC 170037 |||||| || || || ||||| |||||||| ||||| ||||||||||| || Sbjct 61 TGAAACTGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAAAC 120 Query 170038 CTACAACATCGTTGCCGCTCACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTT 170097 ||||||||||| || || ||||||||||| || || | |||||||||||||| || Sbjct 121 TTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGTTT 180 Query 170098 CAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTTGTTGGCATCTGGTT 170157 ||||||||| ||| | | ||||||||| | || || ||||| ||||| || |||||||| Sbjct 181 CAACAACTCTCGTGCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATCTGGTT 240 Query 170158 CACCGCTCTTGGTGTCTCCACGATGGCGTTCAACCTGAACGG 170199 || ||||||||||| || ||||| |||||| | || || Sbjct 241 AACTGCTCTTGGTGTTAGTACTATGGCATTCAACTTAAATGG 282 >seq49 Length=2147 Score = 143 bits (158), Expect = 3e-29 Identities = 152/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 170177 ACGATGGCGTTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGT 170236 || ||||| |||||| | || ||||||||||||||||| || | | ||| | || || Sbjct 2140 ACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCGGTTGTTGATAGCCAAGGC 2081 Query 170237 CGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATG 170296 || ||| ||||||| ||||| ||| || |||||||||||| | | || |||||||| ||| Sbjct 2080 CGCGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATG 2021 Query 170297 CACGAGCGTAATGCTCACAACTTCCCTCTCGACCTCGCTGCTGCTGA-GTCCACTCCTGT 170355 ||||| ||||| || |||||||||||||| || | || | || | || | |||||| Sbjct 2020 CACGAACGTAACGCGCACAACTTCCCTCTAGATTTAGCCGTATCTAATGTTC-TTCCTGT 1962 Query 170356 GGCACTCACCGCTCCTGC 170373 ||| | | ||||||||| Sbjct 1961 TGCATTAAACGCTCCTGC 1944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592022287598320