Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq22358 149 1e-30 seq13286 149 1e-30 seq5368 127 4e-24 seq11801 91.5 3e-13 >seq22358 Length=3586 Score = 149 bits (164), Expect = 1e-30 Identities = 173/232 (75%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || ||||| || || |||| || | ||| || ||||||||||||||||| | Sbjct 3326 CCGCCTCGCAGACGCAGGACCAAGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAG 3267 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTT-CCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| ||||| || || || ||| || ||||| | || || ||||| ||| Sbjct 3266 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGG 3207 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| ||||||||| || || | ||||| ||||| | ||||| Sbjct 3206 GATGCCCTCCTTGTCCTGGATCTTTTGCTTCACATTCTCGATGGTGTCGCTGGGCTCGAC 3147 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 ||||| ||||| ||||| ||||||| ||||| ||||| || ||||| ||| Sbjct 3146 ATCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCATCTTC 3095 >seq13286 Length=1322 Score = 149 bits (164), Expect = 1e-30 Identities = 172/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| |||||||| || | |||| || | ||| || || |||||||||||||| | Sbjct 1118 ACCGCCACGCAGACGCAACACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 1059 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||| || ||||| || || ||||| || ||||| | || || ||||| ||| Sbjct 1058 AAGCGTGCGCCCGTCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGG 999 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| ||||||||| || ||| | ||||| ||||| | || || Sbjct 998 GATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCAC 939 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 ||||| ||||| || || ||||||| ||||| ||||| || ||||| ||| Sbjct 938 GTCGAGCGTGATGGTTTTGCCCGTCAGGGTCTTGACGAAGATTTGCATCTTC 887 >seq5368 Length=5397 Score = 127 bits (140), Expect = 4e-24 Identities = 130/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| ||||||||||| || || || ||||||||||| | || || |||||| || Sbjct 2591 AGCGTACGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGG 2650 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| ||| ||| | ||||| ||||| | || || Sbjct 2651 ATGCCCTCCTTGTCCTGGATCTTCTGTTTCACGTTCTCGATGGTGTCGCTGGGCTCCACA 2710 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| ||||| ||||| ||||||| ||||| ||||| || ||||| || Sbjct 2711 TCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCATCTT 2760 >seq11801 Length=2927 Score = 91.5 bits (100), Expect = 3e-13 Identities = 169/244 (69%), Gaps = 8/244 (3%) Strand=Plus/Minus Query 273806 GTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACC-CTCGGG--CAGTA-GCCAGTTTA 273861 |||||| || || | ||||| |||||||| || |||||| ||| | |||| | Sbjct 2411 GTCCTTCCCCCCCATAATCCTCGTGCCAAACTGCCCACTCGGGAACAGAAAGCCA----A 2356 Query 273862 TGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGGATACCT 273921 ||||||| ||||| ||| ||||||||| || || ||||| | | || ||| Sbjct 2355 TGTTGTTCGAGCCGACAAAATTCTGAGCCATCCCGACAATGGTCCCGTTCAACGAGGCCT 2296 Query 273922 CGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCACTGAACTGAGCAACCTTCACAT 273981 | ||||||||||| || || || | | ||| ||| | ||| || ||||| | | Sbjct 2295 CCCCGTGGTGATACGCCGAATGCTCAGACACATACCCAGCAAGCTGCGCGACCTTAATCT 2236 Query 273982 CGCTCGTCAAGTTTCGCTTGAATGCGGAATACAACACCTTCCGCTGCGAGGGCTTGAACC 274041 | || |||| ||||||| || | | |||||||||||||||||| ||||| |||| Sbjct 2235 CCTTCTTCAAACTTCGCTTAAAACACGCAAACAACACCTTCCGCTGCGCCGGCTTCAACC 2176 Query 274042 CATC 274045 |||| Sbjct 2175 CATC 2172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046420130667314