Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq13286 152 4e-32 seq22358 141 7e-29 seq5368 116 3e-21 seq10165 82.4 5e-11 >seq13286 Length=1322 Score = 152 bits (168), Expect = 4e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | |||||||| ||| || ||| |||||| ||||||||||| || | Sbjct 1117 CCGCCACGCAGACGCAACACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 1058 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || |||| |||| |||||||||||||| || ||||| | |||||||| || | || Sbjct 1057 AGCGTGCGCCCGTCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 998 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| ||||| ||||||| |||| | || |||||| || ||||| Sbjct 997 ATGCCCTCCTTGTCCTGGATCTTTTGCTTCAC-GTTCTCGATCGTGTCGCTGGGCTCCAC 939 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || | ||| || || || ||||| |||||||| |||||||||||||| Sbjct 938 GTCGAGCGTGATGGTTTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 891 >seq22358 Length=3586 Score = 141 bits (156), Expect = 7e-29 Identities = 169/228 (74%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || |||| ||| | || |||| ||| || ||| |||||||||||||||||| || | | Sbjct 3326 CCGCCTCGCAGACGCAGGACCAAGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAG 3267 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTT-CCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 || ||| |||| ||||||||||| ||| || ||||| | |||||||| || | || Sbjct 3266 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGG 3207 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| ||||| ||||||| | | ||||||||| || || || Sbjct 3206 GATGCCCTCCTTGTCCTGGATCTTTTGCTTCACATTCTCGATGGTGTCGCTGGGCTCGAC 3147 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || | || || ||||| ||||| |||||||| |||||||||||||| Sbjct 3146 ATCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 3099 >seq5368 Length=5397 Score = 116 bits (128), Expect = 3e-21 Identities = 121/156 (78%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || ||||||||||| ||||||||||| | |||||||| || | || | || ||||| Sbjct 2603 TCCTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 2662 Query 44243 TCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAAT 44301 ||| |||||||| ||| | |||| | ||||||||| || ||||| || | || || Sbjct 2663 TCCTGGATCTTCTGTTTC-ACGTTCTCGATGGTGTCGCTGGGCTCCACATCGAGGGTGAT 2721 Query 44302 CGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| ||||| |||||||| |||||||||||||| Sbjct 2722 GGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 2757 >seq10165 Length=1505 Score = 82.4 bits (90), Expect = 5e-11 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 44216 TGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGT 44274 ||||| || | || | |||||||| ||| |||||||||||| | |||| | || || Sbjct 4 TGCTGGTCAGGGGGTATGCCTTCCTTGTCCTGGATCTTCTGCTTC-ACGTTCTCGATCGT 62 Query 44275 GTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTG 44334 |||| | ||||| |||| ||| || ||||| ||||| || ||||| |||||||| || Sbjct 63 GTCGCTCGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTG 122 Query 44335 CATG 44338 |||| Sbjct 123 CATG 126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359886019771047