Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq13286 149 2e-30 seq5368 143 6e-29 seq22358 138 3e-27 seq10165 84.2 5e-11 >seq13286 Length=1322 Score = 149 bits (164), Expect = 2e-30 Identities = 159/207 (77%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| ||||| || || || || || ||||| ||||| ||||| ||||| || ||| Sbjct 894 CAAATCTTCGTCAAGACCCTGACGGGCAAAACCATCACGCTCGACGTGGA--GCCCAGCG 951 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| ||||||||||| || |||||||| |||||||| || || ||||| || ||||||| Sbjct 952 ACACGATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAGC 1011 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || |||||||| || || ||||| || || || | || ||| | || || ||| Sbjct 1012 AGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGACGGGCGCACGCTTTCGGACTACAACA 1071 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || || || || ||||| |||| Sbjct 1072 TCCAGAAGGAGTCCACCCTGCA-CTTG 1097 >seq5368 Length=5397 Score = 143 bits (158), Expect = 6e-29 Identities = 127/157 (81%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| ||||| || || || || || || || ||||||||||| ||||| || ||| Sbjct 2754 CAAATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGATGTGGA--GCCCAGCG 2697 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| ||||| ||||| |||||||| || || ||||| || ||||||| Sbjct 2696 ACACCATCGAGAACGTGAAACAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGC 2637 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 | ||||| ||||| ||||| || ||||| || ||||| Sbjct 2636 AGCGACTCATCTTTGCCGGCAAGCAGCTGGAGGATGG 2600 >seq22358 Length=3586 Score = 138 bits (152), Expect = 3e-27 Identities = 158/208 (76%), Gaps = 6/208 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 ||||| ||||| || || || || || || || ||||||||||| || | ||| || | Sbjct 3102 CAAATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGATGTCG--AGCCCAGCG 3159 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| || || |||||||| |||||||| || || ||||| || ||||||| Sbjct 3160 ACACCATCGAGAATGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAGC 3219 Query 178042 AACGACTTATCTTCGC-CGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 | || || |||||||| || || ||||| || || || | || || | || || ||| Sbjct 3220 AGCGCCTCATCTTCGCGGGGCAAGCAGCTGGAGGACGGCCGCACGCTCTCGGACTACAAC 3279 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTG 178128 ||||||| || || || ||||| |||| Sbjct 3280 ATCCAAAAGGAGTCCACCCTGCA-CTTG 3306 >seq10165 Length=1505 Score = 84.2 bits (92), Expect = 5e-11 Identities = 93/122 (76%), Gaps = 4/122 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || || || || || || ||||| || || ||||| || || Sbjct 122 CAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTGGACGTGGA--GCCGAGCG 65 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| ||||||||||| || || ||||| |||||||| ||||| || || || ||||||| Sbjct 64 ACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATACCCCCTGACCAGC 5 Query 178042 AA 178043 || Sbjct 4 AA 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203364276022454