Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20limnetica_20[genbank_20GCA_5F001614225.1_202016- 04-08] 23,791 sequences; 33,508,916 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq22358 158 1e-33 seq5368 102 8e-17 seq10165 91.5 1e-13 >seq22358 Length=3586 Score = 158 bits (174), Expect = 1e-33 Identities = 176/234 (75%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 |||||||| || ||||| | |||| ||||| ||| |||||| || ||||| ||||| Sbjct 3329 CCGCCGCCTCGCAGACGCAGGACCAAGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCC 3270 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTG-CCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 ||||| ||||| |||| || ||||||||| || ||||| || |||||||| ||||| | Sbjct 3269 GAGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCCGCGAAGATGAGGCGCTGCTGGTCGGG 3210 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 || | || |||||||||| ||| |||||||||| | | |||||||| | ||| Sbjct 3209 CGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTCACATTCTCGATGGTGTCGCTGGGCTC 3150 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || | || || || || |||||||| ||||| ||||| || ||||| || Sbjct 3149 GACATCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCATCTT 3096 >seq5368 Length=5397 Score = 102 bits (112), Expect = 8e-17 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| || || | || || |||||||||||||| || || || ||||| ||||| | ||| Sbjct 2590 GAGCGTACGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGG 2649 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| || || |||| | | |||||||| | |||||| Sbjct 2650 GATGCCCTCCTTGTCCTGGATCTTCTGTTTCACGTTCTCGATGGTGTCGCTGGGCTCCAC 2709 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || | || || || || |||||||| ||||| ||||| || ||||| || Sbjct 2710 ATCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCATCTT 2760 >seq10165 Length=1505 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 41741 TGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTG 41800 || ||||| | ||| | || ||||||||| ||| || ||||||| | | ||| Sbjct 4 TGCTGGTCAGGGGGTATGCCTTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTG 63 Query 41801 TCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGC 41860 ||||||| |||||| |||| ||| || || || |||||||||||||| ||||| |||||| Sbjct 64 TCGCTCGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGC 123 Query 41861 ATG 41863 ||| Sbjct 124 ATG 126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462166516569200