Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq3272 140 3e-28 >seq3272 Length=24018 Score = 140 bits (154), Expect = 3e-28 Identities = 292/435 (67%), Gaps = 0/435 (0%) Strand=Plus/Plus Query 18788 GGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGA 18847 ||| ||||| || || | ||||||||||||||| | |||||||| || ||||| || || Sbjct 18444 GGGAGACCTAGGACCGGTGTACGGCTTCCAGTGGCGGCATTTTGGGGCTGAATACAAGGA 18503 Query 18848 CTGTCAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAAT 18907 || | |||| | | || |||||||||||| || || || || || || Sbjct 18504 TATGCACGCGGACTACACCGGGAAGGGCATCGATCAGCTGGCAAATGCAATTGAGACGAT 18563 Query 18908 TAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCC 18967 || | ||| || ||| ||||| || ||| | || | |||||||| |||| | Sbjct 18564 AAAGAAAAATCCGGAAGATCGACGGATCATTGTCTCAGCCTGGAATCCTTCGGATCTGGG 18623 Query 18968 CTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATT 19027 |||| | || || ||||||| ||| ||||||||||| || ||||| || || | Sbjct 18624 GAAGATGGCGTTGCCCCCGTGTCACATGTTTTGTCAGTTTTATGTGGCAAATGGGGAGCT 18683 Query 19028 ATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGC 19087 |||||||| | ||||| | | ||||||||| | || || ||||| || ||||| Sbjct 18684 GTCCTGCCAGATGTACCAACGCAGCGCGGATATGGGTTTGGGTGTGCCGTTTAATATTGC 18743 Query 19088 TGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTT 19147 | |||||| | || ||| | | || ||||| || || | | || || || Sbjct 18744 TTCGTATGCATTGCTCACCAGCTTGGTGGCGCAGGTGTGTGGGTTGGCGCCAGGGGAGTT 18803 Query 19148 AATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCA 19207 | || ||||| |||||||| || |||||| |||||| | || || || || | ||| Sbjct 18804 CGTGCACACAATTGGGGATGCTCACGTTTACTCGAATCACGTCGAGGCCTTGAAGGAGCA 18863 Query 19208 GCTAGCTCGATCCCC 19222 | | | ||| |||| Sbjct 18864 GTTGACGCGAACCCC 18878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399475511744295