Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq3272 104 2e-17 >seq3272 Length=24018 Score = 104 bits (114), Expect = 2e-17 Identities = 289/441 (66%), Gaps = 2/441 (0%) Strand=Plus/Minus Query 101657 GGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAGCATCT 101716 || ||||||||||||||| || | || || | ||||| || | ||||||||| Sbjct 18878 GGGGTTCGCGTCAACTGCTCCTTCAAGGCCTCGACGTGATTCGAGTAAACGTGAGCATCC 18819 Query 101717 CCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCAAGTT 101776 || || || || | ||||| || ||| | | | || || || | || || || Sbjct 18818 CCAATTGTGTGCACGAACTCCCCTGGCGCCAACCCACACACCTGCGCCACCAAGCTGGTG 18759 Query 101777 AAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGA 101836 | | | ||| |||||| ||||| ||||| || || |||||||| || | ||| Sbjct 18758 AGCAATGCATACGAAGCAATATTAAACGGCACACCCAAACCCATATCCGCGCTGCGTTGG 18699 Query 101837 TACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAATACATGACAAGGC 101896 |||| || ||||| |||| |||| |||||||| |||| || | ||||| || Sbjct 18698 TACATCTGGCAGGACAGCTCCCCATTTGCCACATAAAACTGACAAAACATGTGACACGGG 18639 Query 101897 GGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTCTATCT 101956 |||||| |||| || | || ||| |||||| || | | | |||| || |||| Sbjct 18638 GGCAACGCCATCTTCCCCAGATCCGAAGGATTCCAGGCTGAGACAATGATCCGTCGATCT 18579 Query 101957 GTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTCTCCTTTA 102016 || ||| | ||||| || ||||| | | | || || | || | || | Sbjct 18578 TCCGGATTTTTCTTTATCGTCTCAATTGCATTTGCCAGCTGATCGATGCCCTTCCCGGTG 18519 Query 102017 TAAT-CGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACAC 102075 || | |||| | | | | || ||||| || || ||||||| |||||| || || ||||| Sbjct 18518 TAGTCCGCGTGC-ATATCCTTGTATTCAGCCCCAAAATGCCGCCACTGGAAGCCGTACAC 18460 Query 102076 AGGTCCAAGATCTCCTTCATC 102096 ||||| || ||||| || || Sbjct 18459 CGGTCCTAGGTCTCCCTCCTC 18439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361225439515601