Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2518 161 1e-34 seq35 154 2e-32 seq159 145 8e-30 >seq2518 Length=13831 Score = 161 bits (178), Expect = 1e-34 Identities = 179/236 (76%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || |||||||| ||||| || || || ||||| || || |||||| |||| || || || Sbjct 5099 AAGATGCAAATCTTCGTCAAGACCCTGACGGGTAAGACAATCACCCTCGATGTGGAGCCC 5158 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||||| | | | |||| | ||| |||| || | ||||| ||||||||||| |||| Sbjct 5159 AGCGACACCATCGAGAACG-TGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCTCCGGA 5217 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| || ||||||| |||||| || || ||||| |||| ||| || || ||||| Sbjct 5218 TCAGCAGCGCCTCATCTTCGCGGGGAAGCAACTGGAGGACGGGCGTACGCTGTCAGACTA 5277 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGCT 40921 ||||||||||||||| | || |||||| | |||||||| || | || |||| || Sbjct 5278 TAACATCCAGAAGGAGTCTACCCTGCATTTGGTGTTGCGTCTGCGTGGTGGCGTCT 5333 >seq35 Length=30318 Score = 154 bits (170), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | |||||||| |||||||| | ||||| || ||| | Sbjct 11277 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGAGCCCAGC 11218 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| | || || | ||||| |||||||||||| | ||||| Sbjct 11217 GACACGATCGAGAACG-TGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 11159 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| |||||| || |||||||| || | ||||| || |||||||| Sbjct 11158 GCAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAA 11099 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | ||||| || | ||| ||||| || | || ||| Sbjct 11098 CATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGGC 11050 Score = 154 bits (170), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | |||||||| |||||||| | ||||| || ||| | Sbjct 11505 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGAGCCCAGC 11446 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| | || || | ||||| |||||||||||| | ||||| Sbjct 11445 GACACGATCGAGAACG-TGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 11387 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| |||||| || |||||||| || | ||||| || |||||||| Sbjct 11386 GCAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAA 11327 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | ||||| || | ||| ||||| || | || ||| Sbjct 11326 CATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGGC 11278 Score = 154 bits (170), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | |||||||| |||||||| | ||||| || ||| | Sbjct 11733 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGAGCCCAGC 11674 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| | || || | ||||| |||||||||||| | ||||| Sbjct 11673 GACACGATCGAGAACG-TGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 11615 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| |||||| || |||||||| || | ||||| || |||||||| Sbjct 11614 GCAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAA 11555 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | ||||| || | ||| ||||| || | || ||| Sbjct 11554 CATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGGC 11506 Score = 154 bits (170), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | |||||||| |||||||| | ||||| || ||| | Sbjct 11961 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGAGCCCAGC 11902 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| | || || | ||||| |||||||||||| | ||||| Sbjct 11901 GACACGATCGAGAACG-TGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 11843 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| |||||| || |||||||| || | ||||| || |||||||| Sbjct 11842 GCAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAA 11783 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | ||||| || | ||| ||||| || | || ||| Sbjct 11782 CATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGGC 11734 Score = 154 bits (170), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | |||||||| |||||||| | ||||| || ||| | Sbjct 12189 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGAGCCCAGC 12130 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| | || || | ||||| |||||||||||| | ||||| Sbjct 12129 GACACGATCGAGAACG-TGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 12071 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| |||||| || |||||||| || | ||||| || |||||||| Sbjct 12070 GCAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAA 12011 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | ||||| || | ||| ||||| || | || ||| Sbjct 12010 CATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGGC 11962 Score = 154 bits (170), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | |||||||| |||||||| | ||||| || ||| | Sbjct 12417 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGAGCCCAGC 12358 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| | || || | ||||| |||||||||||| | ||||| Sbjct 12357 GACACGATCGAGAACG-TGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 12299 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| |||||| || |||||||| || | ||||| || |||||||| Sbjct 12298 GCAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAA 12239 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | ||||| || | ||| ||||| || | || ||| Sbjct 12238 CATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGGC 12190 Score = 154 bits (170), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | |||||||| |||||||| | ||||| || ||| | Sbjct 12645 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTGGAGCCCAGC 12586 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| | || || | ||||| |||||||||||| | ||||| Sbjct 12585 GACACGATCGAGAACG-TGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 12527 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| |||||| || |||||||| || | ||||| || |||||||| Sbjct 12526 GCAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAA 12467 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | ||||| || | ||| ||||| || | || ||| Sbjct 12466 CATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGGC 12418 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | |||||||| |||||||| | ||||| || ||| | Sbjct 11049 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATCACGCTGGACGTAGAGCCCAGC 10990 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| | || || | ||||| |||||||||||| | ||||| Sbjct 10989 GACACGATCGAGAACG-TGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 10931 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| |||||| || |||||||| || | ||||| || |||||||| Sbjct 10930 GCAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGCACGCTTTCTGACTACAA 10871 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | ||||| || | ||| ||||| || | || || Sbjct 10870 CATCCAGAAGGAGTCTACGCTCCACTTGGTGCTGCGCCTGCGCGGAGG 10823 Score = 134 bits (148), Expect = 1e-26 Identities = 153/203 (75%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 40716 GGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAA 40774 |||||| |||||||| | ||||| || ||| ||||| | | |||| | ||| | | Sbjct 12847 GGGCAAGACCATCACGCTGGACGTGGAGCCCAGCGACACGATCGAGAACG-TGAAGCAGA 12789 Query 40775 AAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAAC 40834 | || | ||||| |||||||||||| | |||||||| || ||||||| |||||| || | Sbjct 12788 AGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTCATCTTCGCGGGGAAGC 12729 Query 40835 AGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATC 40894 ||||||| || | ||||| || ||||||||||||||||||||| | ||||| || Sbjct 12728 AGCTGGAGGATGGCCGCACGCTTTCTGACTACAACATCCAGAAGGAGTCTACGCTCCACT 12669 Query 40895 TAGTGTTGCGCTTGAGGGGCGGC 40917 | ||| ||||| || | || ||| Sbjct 12668 TGGTGCTGCGCCTGCGCGGAGGC 12646 >seq159 Length=12779 Score = 145 bits (160), Expect = 8e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| ||||||||| | || || || ||| | Sbjct 10701 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTAGATGTTGAGCCCAGC 10642 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||| |||| || | ||||| || || |||||| | || ||| Sbjct 10641 GACACAATCGAGAATGTGAAGCAAAAGATCCAGGACAAGGAAGGGATCCCCCCTGATCAG 10582 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| |||||||| |||||||| |||| ||||| || ||||||||| Sbjct 10581 CAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAGGACGGCCGCACGCTTTCGGACTACAAC 10522 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGG 40919 || ||||||||| |||| |||| || || ||||| || | ||||| || Sbjct 10521 ATTCAGAAGGAGTCCACATTGCACCTGGTTCTGCGCCTGCGAGGCGGAGG 10472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515181518155760