Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq3272 127 1e-24 >seq3272 Length=24018 Score = 127 bits (140), Expect = 1e-24 Identities = 407/629 (65%), Gaps = 42/629 (7%) Strand=Plus/Minus Query 97021 GGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGCATCT 97080 || |||||||| | |||||| | | || || | ||||||| |||| ||||||||| Sbjct 18878 GGGGTTCGCGTCAACTGCTCCTTCAAGGCCTCGACGTGATTCGAGTAAACGTGAGCATCC 18819 Query 97081 CCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGTT 97140 || | ||||| | || || || || | || || || || || | || | || Sbjct 18818 CCAATTGTGTGCACGAACTCCCCTGGCGCCAACCCACACACCTGCGCCACCAAGCTGGTG 18759 Query 97141 AATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGA 97200 | | | ||| |||||| ||||| ||||| || | |||||||| || | ||| Sbjct 18758 AGCAATGCATACGAAGCAATATTAAACGGCACACCCAAACCCATATCCGCGCTGCGTTGG 18699 Query 97201 TATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTCAATACATGACAGGGG 97260 || | ||| ||||| |||| |||| |||||||||||||| || | ||||| ||| Sbjct 18698 TACATCTGGCAGGACAGCTCCCCATTTGCCACATAAAACTGACAAAACATGTGACACGGG 18639 Query 97261 GGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTCTATCG 97320 ||||||||||| || | ||| | |||||| || | | | || | || ||| Sbjct 18638 GGCAACGCCATCTTCCCCAGATCCGAAGGATTCCAGGCTGAGACAATGATCCGTCGATCT 18579 Query 97321 GTTGGGTTTGTGTGTATGGTATTAATT--ATCTGCTTTAATTGATCAACGCCTTCTCCAC 97378 || ||| | | ||| || | |||| || ||| | ||||| | ||| | || Sbjct 18578 TCCGGATTTTTCTTTATCGTCTCAATTGCATTTGC--CAGCTGATCGATGCCCTTCCCGG 18521 Query 97379 CATAAT---TGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCAT 97435 || | |||| || ||||| ||||| || |||||||||| ||| ||||| || | Sbjct 18520 TGTAGTCCGCGTGCATA--TCCTTG-TATTCAGCCCCAAAATGCCGCCACTGGAAGCCGT 18464 Query 97436 AAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAATAGGACC 97495 | || ||||| |||||||| || || | || | || || | || || | || || Sbjct 18463 ACACCGGTCCTAGGTCTCCCTCCTCCCGATTGCTCAACCCTATTTTGTCCAGGTACTCCC 18404 Query 97496 TAGATCCA-TTTGCATCCCAAATGTGCACACCAGATGCTGCAAGCTCTTTG-CTGTCAGT 97553 | | | | ||| | |||||||| | ||| || |||| || ||| | Sbjct 18403 T-GCTAGAGTTTCCGTCCCAAAT---------------TCCAATCTTTTTGTCTTTCAAT 18360 Query 97554 AGAT--------------CCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAA 97599 |||| || || | |||||||| ||| || ||| | || || | |||| Sbjct 18359 AGATTCGAGTTTGTCTTGCCACTCACAAACCACAGCAACTCCTCCGCGACCCCCCGCCAA 18300 Query 97600 AATACTCTCTTAGTTGTTAAGAGAGGAAA 97628 ||||| |||||||| |||||||||||||| Sbjct 18299 AATACCCTCTTAGTCGTTAAGAGAGGAAA 18271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346759271158070