Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq35 131 1e-25 seq2518 127 2e-24 seq159 118 9e-22 seq4787 95.1 1e-14 seq3524 84.2 2e-11 >seq35 Length=30318 Score = 131 bits (144), Expect = 1e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||||||||| | | || ||||||||||| |||||||| || || |||||||| || Sbjct 10822 ACCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGA 10881 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||||| |||||| ||||| || || ||| ||||||| |||||||| ||||| || Sbjct 10882 AAGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGG 10941 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 |||||||||||||| || || || || || | |||| ||||| || ||| || Sbjct 10942 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTAC 11001 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || | || | || ||||| |||| || || || || || |||||| || Sbjct 11002 GTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATGCCT 11053 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | | || ||||||||||| |||||||| || || |||||||| || Sbjct 11051 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 11110 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| |||||| ||||| || || ||| ||||||| |||||||| ||||| || Sbjct 11111 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 11170 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| || || || || || | |||| ||||| || ||| || Sbjct 11171 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACG 11230 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || | || | || ||||| |||| || || || || || |||||| || Sbjct 11231 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATGCCT 11281 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | | || ||||||||||| |||||||| || || |||||||| || Sbjct 11279 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 11338 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| |||||| ||||| || || ||| ||||||| |||||||| ||||| || Sbjct 11339 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 11398 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| || || || || || | |||| ||||| || ||| || Sbjct 11399 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACG 11458 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || | || | || ||||| |||| || || || || || |||||| || Sbjct 11459 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATGCCT 11509 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | | || ||||||||||| |||||||| || || |||||||| || Sbjct 11507 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 11566 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| |||||| ||||| || || ||| ||||||| |||||||| ||||| || Sbjct 11567 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 11626 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| || || || || || | |||| ||||| || ||| || Sbjct 11627 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACG 11686 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || | || | || ||||| |||| || || || || || |||||| || Sbjct 11687 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATGCCT 11737 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | | || ||||||||||| |||||||| || || |||||||| || Sbjct 11735 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 11794 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| |||||| ||||| || || ||| ||||||| |||||||| ||||| || Sbjct 11795 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 11854 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| || || || || || | |||| ||||| || ||| || Sbjct 11855 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACG 11914 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || | || | || ||||| |||| || || || || || |||||| || Sbjct 11915 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATGCCT 11965 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | | || ||||||||||| |||||||| || || |||||||| || Sbjct 11963 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 12022 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| |||||| ||||| || || ||| ||||||| |||||||| ||||| || Sbjct 12023 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 12082 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| || || || || || | |||| ||||| || ||| || Sbjct 12083 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACG 12142 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || | || | || ||||| |||| || || || || || |||||| || Sbjct 12143 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATGCCT 12193 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | | || ||||||||||| |||||||| || || |||||||| || Sbjct 12191 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 12250 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| |||||| ||||| || || ||| ||||||| |||||||| ||||| || Sbjct 12251 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 12310 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| || || || || || | |||| ||||| || ||| || Sbjct 12311 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACG 12370 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || | || | || ||||| |||| || || || || || |||||| || Sbjct 12371 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATGCCT 12421 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | | || ||||||||||| |||||||| || || |||||||| || Sbjct 12419 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 12478 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| |||||| ||||| || || ||| ||||||| |||||||| ||||| || Sbjct 12479 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 12538 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| || || || || || | |||| ||||| || ||| || Sbjct 12539 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACG 12598 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || | || | || ||||| |||| || || || || || |||||| || Sbjct 12599 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATGCCT 12649 Score = 113 bits (124), Expect = 4e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | | || ||||||||||| |||||||| || || |||||||| || Sbjct 12647 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 12706 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| |||||| ||||| || || ||| ||||||| |||||||| ||||| || Sbjct 12707 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 12766 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| || || || || || | |||| ||||| || ||| || Sbjct 12767 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACG 12826 Query 118692 TCGACGGTCACCGTTTTGCC 118711 || | || | || ||||| Sbjct 12827 TCCAGCGTGATGGTCTTGCC 12846 >seq2518 Length=13831 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||||||||| || | |||||||| || || ||||| || || || || ||| || Sbjct 5314 CAACACCAAATGCAGGGTAGACTCCTTCTGGATGTTATAGTCTGACAGCGTACGCCCGTC 5255 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| || || || || ||| ||||||| ||||||||||| ||||| |||||||||||||| Sbjct 5254 CTCCAGTTGCTTCCCCGCGAAGATGAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTC 5195 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || ||||| || || | |||| |||||| || ||| || |||| ||| | || Sbjct 5194 CTGGATCTTTTGCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACATCGAGGGTGATTGT 5135 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || ||||| || || || || || ||||| Sbjct 5134 CTTACCCGTCAGGGTCTTGACGAAGATTTGCAT 5102 >seq159 Length=12779 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | ||| ||||| || ||||||||||| || | ||||| ||||| Sbjct 10493 ACCAGGTGCAATGTGGACTCCTTCTGAATGTTGTAGTCCGAAAGCGTGCGGCCGTCCTCC 10552 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| ||||||||||| || || || || |||||||| Sbjct 10553 AGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGATCAGGGGGGATCCCTTCCTTGTCCTGG 10612 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||||| || || | |||| ||||| || ||| || || | ||| | || ||| Sbjct 10613 ATCTTTTGCTTCACATTCTCGATTGTGTCGCTGGGCTCAACATCTAGGGTGATGGTCTTG 10672 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || ||||| || || || || |||||||||||| Sbjct 10673 CCCGTCAGGGTCTTGACGAAGATCTGCATGGCT 10705 >seq4787 Length=11161 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 |||||| | ||| || || || |||| || |||||||| || || || || |||||||| Sbjct 6623 ATCCTCCAACTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCAGGGGGGATACCCTCCTT 6564 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 ||| ||| ||||| || || | |||| ||||| || |||||| |||| ||| | Sbjct 6563 GTCCTGAATCTTTTGCTTCACGTTCTCGATTGTGTCGCTGGGCTCGACATCGAGGGTAAT 6504 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || ||||| ||||| || || || || || |||||| Sbjct 6503 GGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCATG 6467 >seq3524 Length=35516 Score = 84.2 bits (92), Expect = 2e-11 Identities = 214/322 (66%), Gaps = 4/322 (1%) Strand=Plus/Plus Query 133044 CGGTCGGCGGCCATGTTTATTATACACTTTGATTTGATCTCCCATGCCGTCTTGAAGAGA 133103 |||||||| ||||||| || | ||||| ||||||||| | ||||| | || Sbjct 10346 CGGTCGGCCGCCATGTCGATGACGCACTTCTGCCGGATCTCCCACACGGTCTTATATAGC 10405 Query 133104 TTCTTGACATGCTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTCGGCCAAAATC 133163 | |||| | | || || | | ||||||||| || ||| | ||| ||| Sbjct 10406 TCTTTGAGCTCACGGGGGATGCTTGCTACGTTCTGCACCGAGCCGCGATTACCCATGATC 10465 Query 133164 TTGTTGCGCAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGACGAGATACTGG 133223 | |||||| | || | | | ||| | || | ||||| || | || || |||| | Sbjct 10466 TGGTTGCGGACCTCGGCATTCCAAAGGCCGCGCTCGATCAGGTCGCCGAGCAGGTACTTG 10525 Query 133224 TTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACAT--TCGACGTGAACG 133281 ||||| | ||| ||||| || || ||||| | | || |||||| | |||||||| | Sbjct 10526 TTGACGATGGTAAATTCGCCCGCCAGCACGCGGC-GCGA-ATACATGTTGGACGTGAAGG 10583 Query 133282 GTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCA 133341 | || | || ||||||||||| || || || ||||| | || ||||||||| ||||| Sbjct 10584 GCTCCACGGACTCGTTGTTGCCCAGGATTTGGGCCGTGGAGGCGGTGGGCATGGGCGCCA 10643 Query 133342 CCAACAAAGAGTTTCTTACGCC 133363 || || || || | ||||| Sbjct 10644 GCAGCAGGGAATTGCGCACGCC 10665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433799463960892