Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq3524 219 9e-52 >seq3524 Length=35516 Score = 219 bits (242), Expect = 9e-52 Identities = 687/1053 (65%), Gaps = 46/1053 (4%) Strand=Plus/Minus Query 248418 CATGTACATCACCAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGGC 248477 ||||||| ||| ||||| ||||| ||| || || | |||||||| || |||| Sbjct 12460 CATGTACGTCAAGAAGCGCGACGGCCGCCTGGAGGCAGTGCAGTTCGACAAGATTACGGC 12401 Query 248478 GCGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTCGATCATGTGGCCATCGC 248537 |||||||||||||| || || ||||| |||||| ||| || | |||| |||| | Sbjct 12400 CCGCATCAAGAAGCTGGTGTACGGCCTGGACGCCAACTACGTGGACCCAGTGGTCATCAC 12341 Query 248538 CCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAGC 248597 ||| || || || ||||||||| ||| || || || | || |||||| ||||| Sbjct 12340 CCAAAAGGTGATCAGCGGCGTCTACGACGGCGTCACCACCTCGGAGCTGGACGAGTTAGC 12281 Query 248598 TGCGGAGACGGCGGCGTACATGGCGATTGCA-CACCCCGACTACTCGCTGCTGGCCGGGA 248656 || ||||||| || ||| || | || || || || | ||| |||||||| Sbjct 12280 GGCCCAGACGGCAGCCTAC-TGCTCAACCCAGCATCCGGATTTCTCCAAGCTGGCCGCCC 12222 Query 248657 GGATCGCCGTCTCAAGGCTTCACAAAGAAACGA--AAGAGTCGTTCGTCGAAACCATGG- 248713 | ||||| || || | | || || | |||| |||| || ||| ||| |||| | Sbjct 12221 GCATCGCTGTGTCGAACTTGCATAAGAACACGACCAAGA-TC-TTCTCCGAGGCCATCGA 12164 Query 248714 -------CTGACCTACATGC---CTATG---GGATGG-------------TCGCCGATGA 248747 | | |||||||| | | | || | ||||||| || Sbjct 12163 GCAGTTCCGCAACTACATGCACCCCAAGAACGGCCAGCCCGCCGCCCTCATCGCCGAGGA 12104 Query 248748 CGTCCACACC---GTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGG 248804 ||| | | | ||||| || ||| | | | | | | || ||| ||| | Sbjct 12103 CGTGTATAACATTGTCAT---GGCTAACAAGGAGCGCATTAATTCGGCAATTATCTATGA 12047 Query 248805 CAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAA 248864 ||| || || || || | || | |||||| ||||||||||| || || || ||||| Sbjct 12046 TCGAGACTTCGACTATGACTATTTCGGTTTCAAGACGCTGGAGAAGTCCTACCTGCTCAA 11987 Query 248865 AATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGAT 248924 || || |||| || |||| ||| ||||||||| | ||||| || || | || || Sbjct 11986 GATGGACGGCATCGTCATGGAGCGACCCCAGCACATGATCATGCGCGTAGCCATTGGAAT 11927 Query 248925 TCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGA-ACGCTGGA 248983 || ||||| ||| | || | | | ||||| |||| ||| | | ||| Sbjct 11926 CCATAAGGAGGACGTGGACGCGGCGATTGAGACCTACAATCTCATGTCCCAGAAGCTCT- 11868 Query 248984 TGACACATGCCACACCGACGCTCTTCAACGCCGGTAC-CGTCAACAATCAGCTGAGCTCG 249042 | || || ||||| || || |||||||||||||| || | | | ||||| ||| Sbjct 11867 TCACTCACGCCACGCCTACACTCTTCAACGCCGGCACGCCGCGGCCG-CAGCTCTCCTCC 11809 Query 249043 TGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAG 249102 ||||| ||||| ||||| | || ||||| ||||||| || |||||||| || || || Sbjct 11808 TGCTTCCTTCTGACCATGAAGGAGGACTCCATCGACGGTATCTATGACACTCTCAAGCAA 11749 Query 249103 ACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCG 249162 ||| || || || ||||| || || || ||| |||| || |||||||| ||| Sbjct 11748 TGTGCGGCCATCTCCAAGTTCGCAGGTGGGATTGGTGTCTCGATCCATAACATCCGGGCG 11689 Query 249163 AAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGA 249222 | ||||||||| || |||| ||| | | || ||||| ||| | || || Sbjct 11688 CGTGACTCGTACATCCGTGGCTCAAACGGGACCTCCAACGGCATCGTGCCCATGCTGCGT 11629 Query 249223 TGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTC 249279 ||| | ||| ||| | | | | |||||| ||| || || ||||| || ||| Sbjct 11628 GTCTTCAACGACACGGCCCGCTACGTGGACCAGGGTGGGGGCAAGCGCAAGGGCTCTTTC 11569 Query 249280 GCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAAC 249339 ||||| || |||| |||||||||||||| || ||||||||||| || |||||| Sbjct 11568 GCCATCTACCTGGAGCCCTGGCACGCCGATATCTTCGAGTTCCTGGATCTGCGCAAGAAC 11509 Query 249340 AACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTG 249399 ||||||| ||||| | | || || ||| | ||||||| ||| ||| | || || Sbjct 11508 CACGGCAATGAGCTGGAGCGGGCCCGCGACTTGTTCTACGCCCTCTGGACGCCTGATCTG 11449 Query 249400 TTCATGCGCCGCGTCAAGGCCGACGGCGATTGG 249432 ||||||| ||||| || ||||||||| ||| Sbjct 11448 TTCATGCAGCGCGTGGAGAACGACGGCGACTGG 11416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073685904095168