Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq3272 158 2e-33 >seq3272 Length=24018 Score = 158 bits (174), Expect = 2e-33 Identities = 316/460 (69%), Gaps = 10/460 (2%) Strand=Plus/Plus Query 35364 TGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCC 35423 |||||| | |||||| | || | | |||||||| | ||||| || ||||| |||| Sbjct 18413 TGGACAAAATAGGGTTGAGCAATCGGGAGGAGGGAGACCTAGGACCGGTGTACGGCTTCC 18472 Query 35424 AATGGCGTCATTTTGGTGCTGAATAT---GATACCTGTTCTTCCGATTATACTGGAAAGG 35480 | ||||| |||||||| |||||||| |||| || | | || || || || |||| Sbjct 18473 AGTGGCGGCATTTTGGGGCTGAATACAAGGATA--TGCACG-CGGACTACACCGGGAAGG 18529 Query 35481 GTATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGA 35540 | || ||||| |||| ||| | | |||| | | ||||||| || ||| || ||| Sbjct 18530 GCATCGATCAGCTGGCAAATGCAATTGAGACGATAAAGAAAAATCCGGAAGATCGACGGA 18589 Query 35541 TGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACA 35600 | ||| | | || ||||||||| |||||| ||||| | || || || |||| Sbjct 18590 TCATTGTCTCAGCCTGGAATCCTTCGGATCTGGGGAAGATGGCGTTGCCCCCGTGTCACA 18649 Query 35601 TGACTGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCG 35660 || | ||| ||||||||||| ||||| || |||| |||||| |||| || || |||| Sbjct 18650 TGTTTTGTCAGTTTTATGTGGCAAATGGGGAGCTGTCCTGCCAGATGTACCAACGCAGCG 18709 Query 35661 GAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATC-TG 35719 ||| | || ||||| ||||| || |||||||| || || | | || || || | || Sbjct 18710 CGGATATGGGTTTGGGTGTGCCGTTTAATATTGCTTCGTATGCATTGCTCAC-CAGCTTG 18768 Query 35720 ATGGC-CAGTATGGTGGGTCTAAAACCGGGAGAGTTTATCCTCACTCTTGGTGACGCACA 35778 |||| ||| |||||| | || || ||||| | | ||| |||| || || || Sbjct 18769 GTGGCGCAGGTGTGTGGGT-TGGCGCCAGGGGAGTTCGTGCACACAATTGGGGATGCTCA 18827 Query 35779 CATTTATAATACCCACATTGAGGTGTTAAAGAAGCAGTTG 35818 | |||| | ||| | |||| || ||| |||||||| Sbjct 18828 CGTTTACTCGAATCACGTCGAGGCCTTGAAGGAGCAGTTG 18867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989509814907705