Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3524 131 2e-25 >seq3524 Length=35516 Score = 131 bits (144), Expect = 2e-25 Identities = 610/959 (64%), Gaps = 12/959 (1%) Strand=Plus/Plus Query 62946 ACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 63005 ||||| || || || || ||||| ||||||| | ||| ||| | || ||||| ||| Sbjct 11114 ACAGAGGCAAGGTTGCAGACGGCAACCTCATCGGGCGCCGTATACTCGATGATCTCCGTG 11173 Query 63006 CAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 63065 || || || | |||||||| ||| | ||| || || || ||| || || ||| Sbjct 11174 CACAGGTTGGAAGACTTGATAACTCCCAGATTCTGCTGGTTCGACTTGAGATTGCAGGCA 11233 Query 63066 TCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 63125 ||||| | || || | || || || || || | ||| || || | | ||| ||| Sbjct 11234 TCCTTGAAGAGCATATAGGGCGTGCCCGTCTCCACCTGTGAGTCCAACACCGCAAACCAC 11293 Query 63126 A-CGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTC---TCTT-TCGTATAGAGTAT 63180 | | || | ||||| || | ||| | |||| | |||| ||||| || Sbjct 11294 AGCTGCTGG-GCCTTGATCACC---TTGCG-CGCCTTGCCACTCTTCTCGTACGTCTCAT 11348 Query 63181 ACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACA 63240 ||| | | || || ||||| || || | ||| | ||| || || | || || | Sbjct 11349 ACAGCTGCTTAAATTCCTCTCCACATACGTCCGCCAGGCCAGGGCACTCGTTGGGGCAGA 11408 Query 63241 TCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 63300 || ||||| || ||||| | || ||| || | ||| || |||||||| |||| || | Sbjct 11409 ACAGAGACCAGTCGCCGTCGTTCTCCACGCGCTGCATGAACAGATCAGGCGTCCAGAGGG 11468 Query 63301 C-TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 63359 | || || || || | | | | ||| || || ||||| ||||| ||| Sbjct 11469 CGTAGAACAAG-TCGCGGGCCCGCTCCAGCTCATTGCCGTGGTTCTTGCGCAGATCCAGG 11527 Query 63360 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTG 63419 ||| | | ||||| | ||||| || |||| ||| ||||| | | || || ||| Sbjct 11528 AACTCGAAGATATCGGCGTGCCAGGGCTCCAGGTAGATGGCGAAAGAGCCCTTGCGCTTG 11587 Query 63420 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 63479 || ||||| || | ||| | || |||| || | || | || ||| || | || Sbjct 11588 CCCCCACCCTGGTCCACGTAGCGGGCCGTGTCGTTGAAGACACGCAGCATGGGCACGATG 11647 Query 63480 CCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATT 63539 ||||| || | || || | || ||| || ||| || || || ||| || Sbjct 11648 CCGTTGGAGGTCCCGTTTGAGCCACGGATGTACGAGTCACGCGCCCGGATGTTATGGATC 11707 Query 63540 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAG 63599 || | ||| || || ||||| | || ||||| || ||| | || | ||||||||| Sbjct 11708 GAGACACCAATCCCACCTGCGAACTTGGAGATGGCCGCACATTGCTTGAGAGTGTCATAG 11767 Query 63600 ATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 63659 || || || ||| || || ||||| | || || || ||| || | || | || Sbjct 11768 ATACCGTCGATGGAGTCCTCCTTCATGGTCAGAAGGAAGCAGGAGGAGAGCTGCGGCCGC 11827 Query 63660 GTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 63719 | || || || || || | ||||| | ||||| || || || | || | ||| Sbjct 11828 GGCGTGCCGGCGTTGAAGAGTGTAGGCGTGGCGTGAGTGAAGAGCTTCTGGGACATGAGA 11887 Query 63720 TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 63779 ||||| |||||||| || | ||| | ||| | ||| ||||| | || || ||||| Sbjct 11888 TTGTAGGTCTCAATCGCCGCGTCCACGTCCTCCTTATGGATTCCAATGGCTACGCGCATG 11947 Query 63780 AACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63839 | ||||||||| |||| || | | || || || || | || |||||| || ||| Sbjct 11948 ATCATGTGCTGGGGTCGCTCCATGACGATGCCGTCCATCTTGAGCAGGTAGGACTTCTCC 12007 Query 63840 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATT 63898 | || || ||||| ||||||| || |||||||| || || ||||| ||||||| Sbjct 12008 AGCGTCTTGAAACCGAAATAGTCATAGTCGAAGTCTCGATCATAGATAATTGCCGAATT 12066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629771536715280