Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq3272 136 3e-27 >seq3272 Length=24018 Score = 136 bits (150), Expect = 3e-27 Identities = 427/657 (65%), Gaps = 17/657 (3%) Strand=Plus/Minus Query 20883 AGCCGCGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTG 20942 ||||| |||||| |||||| | | || ||| | || || || ||||| || Sbjct 18896 AGCCGAGGAAACTTGGCCGGGGTTCGCGTCAACTGCTCCTTCAAGGCCTCGACGTGATTC 18837 Query 20943 TTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACG 21002 ||||||||| || || || | |||||||| || || || || | || || || Sbjct 18836 GAGTAAACGTGAGCATCCCCAATTGTGTGCACGAACTCCCCTGGCGCCAACCCACACACC 18777 Query 21003 TGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCC 21062 || || | || || || | || || || || |||||||| || || | ||| Sbjct 18776 TGCGCCACCAAGCTGGTGAGCAATGCATACGAAGCAATATTAAACGGCACACCCAAACCC 18717 Query 21063 ATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGA 21122 || || ||| | ||||||| |||||||||||||||||| ||||| ||||||||| Sbjct 18716 ATATCCGCGCTGCGTTGGTACATCTGGCAGGACAGCTCCCCATTTGCCACATAAAACTGA 18657 Query 21123 CACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCAC 21182 || || | |||||| || || | |||||| | | || |||| || ||||| || | Sbjct 18656 CAAAACATGTGACACGGGGGCAACGCCATCTTCCCCAGATCCGAAGGATTCCAGGCTGAG 18597 Query 21183 ATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCACGTAACGCAGCTGG 21242 | || ||| || ||||| | || | || || || | | | |||||| Sbjct 18596 ACAATGATCCGTCGATCTTCCGGATTTTTCTTTATCGTCTCAATTGCATTTGCCAGCTGA 18537 Query 21243 TCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTC 21302 || | |||| || ||||| |||| || |||| || ||||||||||| | | Sbjct 18536 TCGATGCCCTTCCCGGTGTAGTCCGCGTGCATATCCTTGTATTCAGCCCCAAAATGCCGC 18477 Query 21303 CACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCCCGAAGCCCTGCGCC 21362 |||||||| ||||||||||| || || || ||||| || | | || |||| Sbjct 18476 CACTGGAAGCCGTACACCGGTCCTAGGTCTCCCTCCTCCCGATTGCTCAA-CCCTATTTT 18418 Query 21363 G-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATT------TTTACGCCGCGGCGCGA 21415 | ||| | | | | || ||||||||||| ||| | | | | Sbjct 18417 GTCCAGGTACTCCCTGCTAGAGTTTCCGTCCCAAATTCCAATCTTTTTGTC---TTTCAA 18361 Query 21416 CAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGACGCCCCT 21475 || | | |||| || ||| || | ||||||||||||||||||| |||| |||| Sbjct 18360 TAGAT---TCGAGTTTGTCTTGCCACTCACAAACCACAGCAACTCCTCCGCGACCCCCCG 18304 Query 21476 CCAAAACACCCTTTTGGTGGTTAACAGAGGAAAC---TCGTCCCTGAGGTTATATCG 21529 |||||| ||||| || || ||||| ||||||||| | || ||||||| || |||| Sbjct 18303 CCAAAATACCCTCTTAGTCGTTAAGAGAGGAAACACATTGTTCCTGAGGCTAAATCG 18247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427745495694480