Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq35 98.7 8e-16 seq159 96.9 3e-15 seq2518 95.1 1e-14 >seq35 Length=30318 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| |||| | | ||||| ||| | |||||||||||| || || ||||| || | Sbjct 12419 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 12478 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | ||||||||||| || ||||| | || || | |||||| || ||| Sbjct 12479 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 12538 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||| ||||| || ||||| || || | ||| || |||| |||||| Sbjct 12539 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCCACG 12598 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || ||||| || || || || || ||||| || |||||||| Sbjct 12599 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 12645 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| |||| | | ||||| ||| | |||||||||||| || || ||||| || | Sbjct 10823 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 10882 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | ||||||||||| || ||||| | || || | |||||| || ||| Sbjct 10883 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 10942 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||| ||||| || ||||| || || | ||| || |||| ||||| Sbjct 10943 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACG 11002 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || ||||| || || || || || ||||| || |||||||| Sbjct 11003 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11049 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| |||| | | ||||| ||| | |||||||||||| || || ||||| || | Sbjct 11051 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 11110 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | ||||||||||| || ||||| | || || | |||||| || ||| Sbjct 11111 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 11170 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||| ||||| || ||||| || || | ||| || |||| ||||| Sbjct 11171 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACG 11230 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || ||||| || || || || || ||||| || |||||||| Sbjct 11231 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11277 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| |||| | | ||||| ||| | |||||||||||| || || ||||| || | Sbjct 11279 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 11338 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | ||||||||||| || ||||| | || || | |||||| || ||| Sbjct 11339 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 11398 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||| ||||| || ||||| || || | ||| || |||| ||||| Sbjct 11399 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACG 11458 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || ||||| || || || || || ||||| || |||||||| Sbjct 11459 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11505 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| |||| | | ||||| ||| | |||||||||||| || || ||||| || | Sbjct 11507 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 11566 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | ||||||||||| || ||||| | || || | |||||| || ||| Sbjct 11567 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 11626 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||| ||||| || ||||| || || | ||| || |||| ||||| Sbjct 11627 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACG 11686 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || ||||| || || || || || ||||| || |||||||| Sbjct 11687 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11733 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| |||| | | ||||| ||| | |||||||||||| || || ||||| || | Sbjct 11735 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 11794 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | ||||||||||| || ||||| | || || | |||||| || ||| Sbjct 11795 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 11854 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||| ||||| || ||||| || || | ||| || |||| ||||| Sbjct 11855 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACG 11914 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || ||||| || || || || || ||||| || |||||||| Sbjct 11915 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 11961 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| |||| | | ||||| ||| | |||||||||||| || || ||||| || | Sbjct 11963 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 12022 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | ||||||||||| || ||||| | || || | |||||| || ||| Sbjct 12023 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 12082 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||| ||||| || ||||| || || | ||| || |||| ||||| Sbjct 12083 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACG 12142 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || ||||| || || || || || ||||| || |||||||| Sbjct 12143 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 12189 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| |||| | | ||||| ||| | |||||||||||| || || ||||| || | Sbjct 12191 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 12250 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | ||||||||||| || ||||| | || || | |||||| || ||| Sbjct 12251 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 12310 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||| ||||| || ||||| || || | ||| || |||| ||||| Sbjct 12311 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACG 12370 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || ||||| || || || || || ||||| || |||||||| Sbjct 12371 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 12417 >seq159 Length=12779 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18814 TCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGC 18873 ||| ||||||| | | |||| |||||| || |||||||| ||||| ||||| |||| Sbjct 10474 TCCGCCTCGCAGGCGCAGAACCAGGTGCAATGTGGACTCCTTCTGAATGTTGTAGTCCGA 10533 Query 18874 CATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGG 18933 | || | ||||||||||||| || |||||| | || || | ||||||||| ||| Sbjct 10534 AAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGATCAGGGGG 10593 Query 18934 CACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGT 18993 | || || ||||| || || || || || | ||| || |||| ||||| Sbjct 10594 GATCCCTTCCTTGTCCTGGATCTTTTGCTTCACATTCTCGATTGTGTCGCTGGGCTCAAC 10653 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| ||||| || || || | || ||||| || || ||||| Sbjct 10654 ATCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 10701 >seq2518 Length=13831 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||||| |||| ||||||||||| || || || || || | || || ||||| Sbjct 5313 AACACCAAATGCAGGGTAGACTCCTTCTGGATGTTATAGTCTGACAGCGTACGCCCGTCC 5254 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 ||||| || || ||||| | || || | |||||||||| || | |||||| ||||| Sbjct 5253 TCCAGTTGCTTCCCCGCGAAGATGAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCC 5194 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 || || || || || | ||| || |||| |||||| |||| ||| || || Sbjct 5193 TGGATCTTTTGCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACATCGAGGGTGATTGTC 5134 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 ||||| || | || ||||| || |||||||| || Sbjct 5133 TTACCCGTCAGGGTCTTGACGAAGATTTGCATCTT 5099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414543237202294