Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq2518 82.4 5e-11 >seq2518 Length=13831 Score = 82.4 bits (90), Expect = 5e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||||||||||||||| || ||||| || || || || || || |||| | | | Sbjct 5316 CGCAACACCAAATGCAGGGTAGACTCCTTCTGGATGTTATAGTCTGACAGCGTACGCCCG 5257 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| |||||| || || || | || ||||| |||| || ||||| || || Sbjct 5256 TCCTCCAGTTGCTTCCCCGCGAAGATGAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTG 5197 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| || || || | | || |||||| |||| | || || || || || Sbjct 5196 TCCTGGATCTTTTGCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACATCGAGGGTGATT 5137 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || ||||| || || || ||||| |||||||| || Sbjct 5136 GTCTTACCCGTCAGGGTCTTGACGAAGATTTGCATCTT 5099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318754868268198