Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq3272 129 4e-25 >seq3272 Length=24018 Score = 129 bits (142), Expect = 4e-25 Identities = 284/423 (67%), Gaps = 2/423 (0%) Strand=Plus/Minus Query 25431 TCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCT 25490 || ||||||| | ||| |||||||| || || | ||||| || ||||| || || | Sbjct 18848 TCGACGTGATTCGAGTAAACGTGAGCATCCCCAATTGTGTGCACGAACTCCCCTGGCGCC 18789 Query 25491 AGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGT 25550 | ||| || | |||| || | ||||| | || || || ||||| || Sbjct 18788 AACCCACACACCTGCGCCACCAAGCTGGTGAGCAATGCATACGAAGCAATATTAAACGGC 18729 Query 25551 ACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCT 25610 || || || ||||| ||| | | | | ||||| | ||| || || ||||| | | Sbjct 18728 ACACCCAAACCCATATCCGCGCTGCGT-TGGTACATCTGGCAGGACAGCTCCCCATTTGC 18670 Query 25611 CACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGG 25670 ||| ||||||||||| | ||| ||||| || | || || |||| || ||| Sbjct 18669 CACATAAAACTGACAAAACATGTGACACGGGGGCAACGCCATCTTCCCCAGATCCGAAGG 18610 Query 25671 GTTCCAGGCGCACACGATGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGT 25730 |||||||| | || ||||| | | ||||| || || | | | || || | Sbjct 18609 ATTCCAGGCTGAGACAATGATCCGTCGATCTTCCGGATTTTTCTTTATCGTCTCAATTGC 18550 Query 25731 GTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGC 25790 ||| ||||||||| | ||| |||| | |||||| || ||| ||| |||| || || Sbjct 18549 ATTTGCCAGCTGATCGATGCCCTTCCCGGTGTAGTCCGCGTGCATATCCTTGTATTCAGC 18490 Query 25791 TCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCC-TGTGCT 25849 || |||| || ||||||||| ||||||||||||||||||||||| || |||| |||| Sbjct 18489 CCCAAAATGCCGCCACTGGAAGCCGTACACCGGTCCTAGGTCTCCCTCCTCCCGATTGCT 18430 Query 25850 CAA 25852 ||| Sbjct 18429 CAA 18427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340113345106623