Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2518 82.4 6e-11 >seq2518 Length=13831 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 ||||| ||||| || || |||||| || ||||| || || | || ||| ||||| Sbjct 5313 AACACCAAATGCAGGGTAGACTCCTTCTGGATGTTATAGTCTGACAGCGTACGCCCGTCC 5254 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 ||||| ||||| || || | || | |||||||||||| || | | ||||||||| Sbjct 5253 TCCAGTTGCTTCCCCGCGAAGATGAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCC 5194 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || ||||| | | | ||||| ||| | | |||| |||| || || || Sbjct 5193 TGGATCTTTTGCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACATCGAGGGTGATTGTC 5134 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| || || || || || || || |||||| Sbjct 5133 TTACCCGTCAGGGTCTTGACGAAGATTTGCATC 5101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421221160971851