Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq159 91.5 1e-13 seq35 86.0 6e-12 >seq159 Length=12779 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 94779 CTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGC 94838 |||| |||| || |||| |||| |||||| || || ||||| || | ||| || || Sbjct 10473 CTCCGCCTCGCAGGCGCAGAACCAGGTGCAATGTGGACTCCTTCTGAATGTTGTAGTCCG 10532 Query 94839 TCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | ||| | ||||||||||| || || ||||||| | | |||||||| || | Sbjct 10533 AAAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGATCAGGGG 10592 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || ||||| ||||| | || ||| ||| || ||| ||||| | | || | Sbjct 10593 GGATCCCTTCCTTGTCCTGGATCTTTTGCTTCACATTCTCGATTGTGTCGCTGGGCTCAA 10652 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | || | |||||||| || || || || || || || |||||||||||| Sbjct 10653 CATCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 10702 >seq35 Length=30318 Score = 86.0 bits (94), Expect = 6e-12 Identities = 161/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||| | || |||| ||||||||| | ||||| ||||| || | ||| | Sbjct 11043 TTTGCATGCCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGT 11102 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || | ||| | |||||||||||| || || | ||||| | | ||||| | Sbjct 11103 AGTCAGAAAGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGT 11162 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | || || || || || ||||| | || || ||| ||| ||| ||||| | Sbjct 11163 CGGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGG 11222 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || ||||| | ||||||||| || || || | || || || ||||| ||||||| Sbjct 11223 GCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATGC 11279 Score = 86.0 bits (94), Expect = 6e-12 Identities = 161/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||| | || |||| ||||||||| | ||||| ||||| || | ||| | Sbjct 11271 TTTGCATGCCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGT 11330 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || | ||| | |||||||||||| || || | ||||| | | ||||| | Sbjct 11331 AGTCAGAAAGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGT 11390 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | || || || || || ||||| | || || ||| ||| ||| ||||| | Sbjct 11391 CGGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGG 11450 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || ||||| | ||||||||| || || || | || || || ||||| ||||||| Sbjct 11451 GCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATGC 11507 Score = 86.0 bits (94), Expect = 6e-12 Identities = 161/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||| | || |||| ||||||||| | ||||| ||||| || | ||| | Sbjct 11499 TTTGCATGCCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGT 11558 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || | ||| | |||||||||||| || || | ||||| | | ||||| | Sbjct 11559 AGTCAGAAAGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGT 11618 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | || || || || || ||||| | || || ||| ||| ||| ||||| | Sbjct 11619 CGGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGG 11678 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || ||||| | ||||||||| || || || | || || || ||||| ||||||| Sbjct 11679 GCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATGC 11735 Score = 86.0 bits (94), Expect = 6e-12 Identities = 161/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||| | || |||| ||||||||| | ||||| ||||| || | ||| | Sbjct 11727 TTTGCATGCCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGT 11786 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || | ||| | |||||||||||| || || | ||||| | | ||||| | Sbjct 11787 AGTCAGAAAGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGT 11846 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | || || || || || ||||| | || || ||| ||| ||| ||||| | Sbjct 11847 CGGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGG 11906 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || ||||| | ||||||||| || || || | || || || ||||| ||||||| Sbjct 11907 GCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATGC 11963 Score = 86.0 bits (94), Expect = 6e-12 Identities = 161/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||| | || |||| ||||||||| | ||||| ||||| || | ||| | Sbjct 11955 TTTGCATGCCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGT 12014 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || | ||| | |||||||||||| || || | ||||| | | ||||| | Sbjct 12015 AGTCAGAAAGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGT 12074 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | || || || || || ||||| | || || ||| ||| ||| ||||| | Sbjct 12075 CGGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGG 12134 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || ||||| | ||||||||| || || || | || || || ||||| ||||||| Sbjct 12135 GCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATGC 12191 Score = 86.0 bits (94), Expect = 6e-12 Identities = 161/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||| | || |||| ||||||||| | ||||| ||||| || | ||| | Sbjct 12183 TTTGCATGCCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGT 12242 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || | ||| | |||||||||||| || || | ||||| | | ||||| | Sbjct 12243 AGTCAGAAAGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGT 12302 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | || || || || || ||||| | || || ||| ||| ||| ||||| | Sbjct 12303 CGGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGG 12362 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || ||||| | ||||||||| || || || | || || || ||||| ||||||| Sbjct 12363 GCTCTACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATGC 12419 Score = 86.0 bits (94), Expect = 6e-12 Identities = 161/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||| | || |||| ||||||||| | ||||| ||||| || | ||| | Sbjct 12411 TTTGCATGCCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGT 12470 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || | ||| | |||||||||||| || || | ||||| | | ||||| | Sbjct 12471 AGTCAGAAAGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGT 12530 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | || || || || || ||||| | || || ||| ||| ||| ||||| | Sbjct 12531 CGGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGG 12590 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || ||||| | ||||||||| || || || | || || || ||||| ||||||| Sbjct 12591 GCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATGC 12647 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | || |||| ||||||||| | ||||| ||||| || | ||| || || Sbjct 10823 CCTCCGCGCAGGCGCAGCACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAA 10882 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | |||||||||||| || || | ||||| | | ||||| || || || Sbjct 10883 AGCGTGCGGCCATCCTCCAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 10942 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||| ||| ||| ||||| | | || ||| Sbjct 10943 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGCTGGGCTCTACG 11002 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | ||||||||| || || || | || || || ||||| ||||||| Sbjct 11003 TCCAGCGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCATGC 11051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448258413102360