Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09-
29] 5,851 sequences; 27,639,860 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq4308 140 5e-29
seq5411 132 8e-27
>seq4308
Length=20057
Score = 140 bits (154), Expect = 5e-29
Identities = 181/245 (74%), Gaps = 4/245 (2%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||||||||| || |||| | | || || || |||||||| || || |||||||| || |
Sbjct 2295 CGCTAAGCGCCACCGCA-AGGTGTTGCGCGACAACATCCAGGGCATTACCAAGCCCGCCA 2353
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| ||| |||||||||| || || || |||||| |||| || || |||| || ||||
Sbjct 2354 TCCGCCGTTTGGCTCGTCGAGGCGGTGTTAAGCGTATCTCGGGCCTGATCTACGAGGAGA 2413
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGA-TGCTTTCCACTATACC 16609
|| | ||| | ||| |||||||| ||| ||| |||| ||| | | || | ||| |||
Sbjct 2414 CCCGCGGTGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGTGACTCCGTTAC-CTACACC 2472
Query 16610 GAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAA 16669
|||||||| || ||||| ||||| || | || |||| || || | || || |||
Sbjct 2473 GAGCACGCCCGCCGCAAGACCGTCACGGCCCTCGACGTCGTGTACGCGCTCAAGCGACAA 2532
Query 16670 GGCCG 16674
|||||
Sbjct 2533 GGCCG 2537
>seq5411
Length=19868
Score = 132 bits (146), Expect = 8e-27
Identities = 186/261 (71%), Gaps = 0/261 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||||||||| |||| | || || || |||||||| || || |||||||| || ||
Sbjct 1430 CGCTAAGCGTCACCGCAAAGTCCTGCGCGACAACATCCAGGGCATTACCAAGCCCGCCAT 1371
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| ||| ||||||| || || || || |||||| |||| || | |||| || ||||
Sbjct 1370 CCGCCGTTTGGCTCGCCGAGGCGGTGTAAAGCGTATCTCGGGCCTCATCTACGAGGAGAC 1311
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | ||| | ||| |||||||| ||| ||| |||| ||| | || ||| || ||
Sbjct 1310 CCGCGGTGTGCTTAAGGTCTTCCTCGAGAACGTCATCCGTGACTCCGTCACCTACACAGA 1251
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || ||||| ||||| || | || |||| || || | || || || ||
Sbjct 1250 GCACGCCCGCCGCAAGACCGTCACGGCCCTCGACGTCGTGTACGCGCTCAAGCGACAGGG 1191
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
||| | | || ||||| ||
Sbjct 1190 CCGCACCCTGTACGGTTTCGG 1170
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79069850389743
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |