Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4308 140 5e-29 seq5411 132 8e-27 >seq4308 Length=20057 Score = 140 bits (154), Expect = 5e-29 Identities = 181/245 (74%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || |||| | | || || || |||||||| || || |||||||| || | Sbjct 2295 CGCTAAGCGCCACCGCA-AGGTGTTGCGCGACAACATCCAGGGCATTACCAAGCCCGCCA 2353 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||| |||||||||| || || || |||||| |||| || || |||| || |||| Sbjct 2354 TCCGCCGTTTGGCTCGTCGAGGCGGTGTTAAGCGTATCTCGGGCCTGATCTACGAGGAGA 2413 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGA-TGCTTTCCACTATACC 16609 || | ||| | ||| |||||||| ||| ||| |||| ||| | | || | ||| ||| Sbjct 2414 CCCGCGGTGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGTGACTCCGTTAC-CTACACC 2472 Query 16610 GAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAA 16669 |||||||| || ||||| ||||| || | || |||| || || | || || ||| Sbjct 2473 GAGCACGCCCGCCGCAAGACCGTCACGGCCCTCGACGTCGTGTACGCGCTCAAGCGACAA 2532 Query 16670 GGCCG 16674 ||||| Sbjct 2533 GGCCG 2537 >seq5411 Length=19868 Score = 132 bits (146), Expect = 8e-27 Identities = 186/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| | || || || |||||||| || || |||||||| || || Sbjct 1430 CGCTAAGCGTCACCGCAAAGTCCTGCGCGACAACATCCAGGGCATTACCAAGCCCGCCAT 1371 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| ||||||| || || || || |||||| |||| || | |||| || |||| Sbjct 1370 CCGCCGTTTGGCTCGCCGAGGCGGTGTAAAGCGTATCTCGGGCCTCATCTACGAGGAGAC 1311 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| |||||||| ||| ||| |||| ||| | || ||| || || Sbjct 1310 CCGCGGTGTGCTTAAGGTCTTCCTCGAGAACGTCATCCGTGACTCCGTCACCTACACAGA 1251 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| ||||| || | || |||| || || | || || || || Sbjct 1250 GCACGCCCGCCGCAAGACCGTCACGGCCCTCGACGTCGTGTACGCGCTCAAGCGACAGGG 1191 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | || ||||| || Sbjct 1190 CCGCACCCTGTACGGTTTCGG 1170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069850389743