Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq5733 641 5e-179 seq225 585 3e-162 >seq5733 Length=57551 Score = 641 bits (710), Expect = 5e-179 Identities = 720/963 (75%), Gaps = 0/963 (0%) Strand=Plus/Minus Query 135365 TGGGAACAGTTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTT 135424 ||||| | |||||| ||| | || ||||| || ||||| | || | |||||||| Sbjct 41865 TGGGAGCGCTTCTGCTCTTGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTC 41806 Query 135425 GGAACGCTGATGATTCCTACTCTTCTCGCAGCTGCTATCTGCTTTATTGTTGCTTTCATC 135484 || | ||||| || || | | ||||| | | |||||| || | ||||||||| Sbjct 41805 GGTGTTTTAATGATCCCAACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATC 41746 Query 135485 GCTGCACCTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTAC 135544 || |||||||| || ||||| || || ||||| ||||| || ||||| || || | ||| Sbjct 41745 GCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATAC 41686 Query 135545 GGAAATAACATCATCTCTGGTGCTGTTATCCCTTCTAGCAACGCCATCGGCCTTCACTTC 135604 ||||| ||||| ||| | ||||| ||||| ||| | ||||| || || |||||||| Sbjct 41685 GGAAACAACATTATCACAGGTGCAGTTATTCCTAGTTCTAACGCTATTGGTATTCACTTC 41626 Query 135605 TATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAA 135664 || || | ||||||||||| ||| | || |||||||| || || ||||||||||| ||| Sbjct 41625 TACCCAGTTTGGGAAGCTGCGTCTGTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAA 41566 Query 135665 CTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTC 135724 || || || || |||||| | | ||||| | |||||||| || || |||||||| Sbjct 41565 CTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTT 41506 Query 135725 TCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCT 135784 ||||| | || ||||| |||||||||| || |||| |||||| || || || || Sbjct 41505 AGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCA 41446 Query 135785 GCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCG 135844 || |||| || ||| | || ||||| ||||||||||| ||| |||||||||||| Sbjct 41445 GCATCTGCAGTATTCTTAGTTTACCCAATTGGACAAGGTAGCTTCTCTGATGGTATGCCT 41386 Query 135845 CTTGGCATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTC 135904 | || |||||||| ||||| |||| |||| | || ||||| ||||||||||||||||| Sbjct 41385 TTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTT 41326 Query 135905 ATGCATCCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCT 135964 ||||| || ||||| ||| || |||||||| || || ||||| ||| | ||| |||| Sbjct 41325 ATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCT 41266 Query 135965 ATGCATGGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAG 136024 ||||| || |||||||| || |||||| | | ||||| || || | | ||| Sbjct 41265 ATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGTGAAACTGAAGACGGCGTATCTGCT 41206 Query 136025 AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGT 136084 ||||| |||||||| ||||| ||||||||||| ||||||||||| || ||||| || ||| Sbjct 41205 AACTACGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGT 41146 Query 136085 TACTTCGGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTT 136144 ||||| || ||| | ||||||||||| ||| ||||||||||| ||| | ||||||| Sbjct 41145 TACTTTGGACGTTTAATCTTCCAATACGCGAGTTTCAACAACTCACGTGCTTTACACTTC 41086 Query 136145 TTCCTTGCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATG 136204 ||| | ||||| ||||| ||||| ||||||||||| |||| || || || ||| ||| Sbjct 41085 TTCTTAGCTGCATGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGGTGTTAGTACTATG 41026 Query 136205 GCGTTCAACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTA 136264 || || ||| | || || |||||||||||||| || |||| | | |||||||||| Sbjct 41025 GCATTTAACTTAAACGGTTTCAACTTCAACCAATCAGTTGTTGATAGTCAAGGTCGTGTG 40966 Query 136265 CTCAACACCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAG 136324 ||||||| ||||| || | | || ||||||| | | |||||||| || |||||||| Sbjct 40965 ATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAA 40906 Query 136325 CGT 136327 ||| Sbjct 40905 CGT 40903 >seq225 Length=49998 Score = 585 bits (648), Expect = 3e-162 Identities = 736/1008 (73%), Gaps = 2/1008 (0%) Strand=Plus/Plus Query 137877 GATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTTTT 137936 ||||||||| | ||||||||||| || || ||| | |||||||| || || || | || Sbjct 37835 GATGACTGGTTAAAACGAGATCGTTTCGTGTTTATTGGTTGGTCAGGCCTTTTATTATTC 37894 Query 137937 CCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCTGG 137996 || || || | | | || ||||||| ||| | || || || || ||||||||| ||| Sbjct 37895 CCAACCGCATTTCTTGCAGTTGGTGGATGGTTAACAGGTACGACTTTTGTTACATCTTGG 37954 Query 137997 TACACCCACGGGTTGGCGTCTAGTTATCTTGAAGGCGCTAATTTCCTCACAGCAGCTGTT 138056 || || || || || || ||| |||| | ||||| ||| ||| | || | ||| || Sbjct 37955 TATACTCATGGATTAGCATCTTCTTATTTAGAAGGATGTAACTTCTTAACTGTAGCAGTA 38014 Query 138057 TCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAA 138116 || || || || | ||||||||| || | || || | ||||| ||||| | ||| Sbjct 38015 TCAACACCAGCAAACAGTATGGGTCACTCATTAATTTTATTATGGGGACCTGAAGCGCAA 38074 Query 138117 GGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGG 138176 |||||| || || ||| | ||| |||| ||| | ||| ||||| | || || ||||| Sbjct 38075 GGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTATGGGCTTTTATAGCACTACACGGT 38134 Query 138177 GCCTTTAGTCTGATTGGATTCATGCTT-CGCCAGTTTGAGATCTCTCGTCTGGTAGGCAT 138235 || ||| || | ||||||||| || || || || || |||||| ||||||| ||||| || Sbjct 38135 GCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTCGAGATCGCTCGTCTTGTAGGTAT 38193 Query 138236 CCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGTTCCT 138295 ||||| ||||||||||| ||||||||||| || || || || || || || ||| | Sbjct 38194 TCGTCCATACAACGCAATTGCATTCTCTGGACCTATTGCGGTATTTGTTTCTGTATTCTT 38253 Query 138296 GATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAGCAAT 138355 || |||||| | || ||| | ||||||||||| ||||| ||||| || ||||| || Sbjct 38254 AATTTATCCTCTAGGACAAGCAAGTTGGTTCTTCGCTCCAAGTTTTGGGGTTGCAGCTAT 38313 Query 138356 CTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTCATAT 138415 |||||||| | || ||| | || ||||||||||||||||| || || || || ||||| Sbjct 38314 TTTCCGATTTTTATTATTCTTACAAGGTTTCCATAACTGGACACTTAATCCATTCCATAT 38373 Query 138416 GATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTACAGT 138475 |||||| |||||||| ||| | || ||||| | | | ||| |||||||| || ||||| Sbjct 38374 GATGGGTGTAGCAGGGATTTTAGGAGGTGCATTATTATCTGCAATTCATGGAGCCACAGT 38433 Query 138476 AGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTGAACCTAC 138535 ||||||||| | | ||||||||| || |||| || || || ||| ||| || Sbjct 38434 AGAAAATACACTATTTGAAGATGGTGATGCTGCAAACACATTCCGTGCGTTTACACCAAC 38493 Query 138536 TCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAATCTTTGG 138595 ||| ||||||||| ||||| ||||| || || || | | |||||| ||||| ||||| Sbjct 38494 ACAATCAGAAGAAACTTATTCGATGGTAACAGCGAATAGATTCTGGTCTCAAATTTTTGG 38553 Query 138596 AATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCGTCATGGG 138655 | ||||| || || ||||||||||| ||||| ||| | |||||||| || | || Sbjct 38554 TGTAGCTTTCTCGAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCTGTAACAGG 38613 Query 138656 TCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGTATGATTT 138715 | | ||||| ||| | |||||||| ||||| | || | || || |||| || ||||| Sbjct 38614 TTTATGGACAAGTTCTTTTGGTATTGTTGGTTTAGCATTAAATTTAAGAGCATACGATTT 38673 Query 138716 CGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACACCAAGAA 138775 |||||| ||||| ||||||| || |||||||| ||||| || || |||||||| || || Sbjct 38674 CGTATCTCAAGAGCTTCGTGCGGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAAA 38733 Query 138776 CATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAACCTCACGAAAA 138835 || | | ||||||||| | | | ||||||||| | || ||||| || ||||| Sbjct 38734 TATCTTATTAAATGAAGGTATTAGATCGTGGATGGCTGCACAAGACCAACCACATGAAAA 38793 Query 138836 CTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCTGTGATA 138883 ||||| || || || || || || ||| | || ||||| || | ||| Sbjct 38794 TTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAATA 38841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627922071990400