Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq5733 517 3e-142 >seq5733 Length=57551 Score = 517 bits (572), Expect = 3e-142 Identities = 701/975 (72%), Gaps = 2/975 (0%) Strand=Plus/Minus Query 19299 TGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCT 19358 ||| |||| || || || ||||| | || | |||||||| || || | ||||| || Sbjct 41847 TGGATCACTAGCACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCA 41788 Query 19359 TGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGAT 19418 ||| || | ||||| | ||||| || |||| || ||||||||||| || |||||| Sbjct 41787 ACATTATTAACAGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGAT 41728 Query 19419 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCT 19478 || ||||| || ||||| ||||| | || || | | ||||||||||| ||||| | Sbjct 41727 ATCGATGGTATCCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACA 41668 Query 19479 GGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCC 19538 || ||||| |||| || || || || || || | ||||| || || | |||||||| Sbjct 41667 GGTGCAGTTATTCCTAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCT 41608 Query 19539 GGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTC 19598 | || |||| |||||| | |||||||| ||||| || |||||||| || || |||||| Sbjct 41607 GCGTCTGTAGACGAGTGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTC 41548 Query 19599 TTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATG 19658 ||| |||| ||||| ||| || | | |||||||| ||| | ||||| ||| Sbjct 41547 TTATTAGGTGTAGCTTGCTACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATG 41488 Query 19659 AGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTC 19718 | || ||||| |||||||| | |||| ||| || | ||||| ||| || || | Sbjct 41487 CGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTA 41428 Query 19719 GTTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACT 19778 ||||||||| |||| ||||| || || ||||||||||||| | ||||| ||||||||| Sbjct 41427 GTTTACCCAATTGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACT 41368 Query 19779 TTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATG 19838 || ||||| ||||| |||||||||||||||||||| || |||||||| || ||||| ||| Sbjct 41367 TTCAACTTCATGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATG 41308 Query 19839 CTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTT 19898 ||||||||||| || || ||||||||| | ||| |||||||||||| | | || Sbjct 41307 GCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTATTCAGTGCTATGCACGGTTCTCTTGTA 41248 Query 19899 ACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTC 19958 || || | ||| ||||| || | ||||| ||||| || || || ||| Sbjct 41247 ACATCTAGTTTAATCCGTGAAACTGAAGACGGCGTATCTGCTAACTACGGTTACAAATTC 41188 Query 19959 GGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATA 20018 || ||||| ||||| || || || || || ||||||||||| |||||||| | || || Sbjct 41187 GGACAAGAAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATC 41128 Query 20019 TTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCC 20078 || ||||| || |||||| || || ||| ||||||| ||||| | ||| | | || Sbjct 41127 TTCCAATACGCGAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCATGGCCA 41068 Query 20079 GTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGT 20138 || || || || ||| | || | | || | | |||||||| || ||| | || ||| Sbjct 41067 GTTGTAGGTATCTGGTTAACTGCTCTTGGTGTTAGTACTATGGCATTTAACTTAAACGGT 41008 Query 20139 TTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAACATGGGCTGA 20197 || ||||| ||||| ||||| |||||| ||||| || | ||| || |||||||| Sbjct 41007 TTCAACTTCAACCAATCAGTTGTTGATAGTCAA-GGTCGTGTGATCAACACTTGGGCTGA 40949 Query 20198 TGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTT 20257 | | || | ||| | | || | ||||| |||||||| || || || || ||||| Sbjct 40948 CATTATCAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTT 40889 Query 20258 CCCACTTGATTTAGC 20272 ||| || |||||||| Sbjct 40888 CCCTCTAGATTTAGC 40874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144431564107356