Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq5733 684 0.0 >seq5733 Length=57551 Score = 684 bits (758), Expect = 0.0 Identities = 720/945 (76%), Gaps = 8/945 (1%) Strand=Plus/Minus Query 211612 GGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCGTA 211671 |||||||| |||||| | ||||||||| | || | || |||| ||||| ||| | Sbjct 41814 GGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAACAGCTACAAGCTGCTTCATCATC 41755 Query 211672 GCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCA 211731 || ||||||||||||||||| || |||||||| || |||||||||||||| ||||| ||| Sbjct 41754 GCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAACCAGTGGCTGGATCA 41695 Query 211732 TTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGT 211791 | | || || |||||||| ||| | ||||||||| |||| ||| ||||| || ||| Sbjct 41694 CTTTTATACGGAAACAACATTATCACAGGTGCAGTTATTCCTAGTTCTAACGCTATTGGT 41635 Query 211792 TTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGT 211851 | |||||||| || | |||||||| || || | || |||||||| ||||| |||||| Sbjct 41634 ATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGACGAGTGGCTTTACAACGGTGGT 41575 Query 211852 CCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAG 211911 |||||||| | ||| | || |||||| | | || | | ||||||||| | | Sbjct 41574 CCTTACCAACTTGTAGTATTACACTTCTTATTAGGTGTAGCTTGCTACATGGGACGTGAA 41515 Query 211912 TGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCT 211971 ||||||||| ||||||||||| |||||||||||||| | || |||| ||||| || Sbjct 41514 TGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGATTTTCGTAGCTTTCTCAGCTCCA 41455 Query 211972 GTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGAC 212031 ||| | ||||| | || |||||| | ||||||||| | || || ||| ||||| || Sbjct 41454 GTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAATTGGACAAGGTAGCTTCTCTGAT 41395 Query 212032 GGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACAT 212091 ||||||||||||||||| || || || |||||||||||||| ||||||||||||||||| Sbjct 41394 GGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCAGAACAC 41335 Query 212092 AACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTA 212151 ||||| ||||||||||||||||||||||| |||||||| ||| |||| |||||| | ||| Sbjct 41334 AACATTCTTATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTGTTTGGTGGATCTTTA 41275 Query 212152 TTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAAC----CACTGG 212207 ||| ||||||||||||||||||||| |||||| | ||||||||||| || || Sbjct 41274 TTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTTTAATCCGTGAAACTGAAGAC-GG 41216 Query 212208 TTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGT 212267 || || ||||| |||||||| ||||||||||||||||| || || |||||||| Sbjct 41215 CGTA---TCTGCTAACTACGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATCGT 41159 Query 212268 TGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAG 212327 |||||||| || ||||| || | | |||||||| || || ||||||||| | Sbjct 41158 AGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAATACGCGAGTTTCAACAACTCACG 41099 Query 212328 AAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGG 212387 ||||||||||||| | || ||||||| ||| | || | |||||||| || | || Sbjct 41098 TGCTTTACACTTCTTCTTAGCTGCATGGCCAGTTGTAGGTATCTGGTTAACTGCTCTTGG 41039 Query 212388 TATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGC 212447 | | | || |||||||| ||| |||| || ||||||||||||||||||||||||||| Sbjct 41038 TGTTAGTACTATGGCATTTAACTTAAACGGTTTCAACTTCAACCAATCAGTTGTTGATAG 40979 Query 212448 ATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGA 212507 |||| || | ||||||| ||| || | ||| | || | | |||||||| Sbjct 40978 TCAAGGTCGTGTGATCAACACTTGGGCTGACATTATCAACCGTGCTGATTTAGGTATGGA 40919 Query 212508 AGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 ||| ||||||||| | || || ||||||||||| || || ||||| Sbjct 40918 AGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGATTTAGC 40874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807496137431560