Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannochloropsis_20oceanica_20[genbank_20GCA_5F000226695.1_202011-09- 29] 5,851 sequences; 27,639,860 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq5733 630 8e-176 seq225 526 2e-144 >seq5733 Length=57551 Score = 630 bits (698), Expect = 8e-176 Identities = 753/1012 (74%), Gaps = 24/1012 (2%) Strand=Plus/Minus Query 170686 CACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTAAC 170745 ||| || || || | ||| | |||||||| ||||| |||||||||||| | |||| Sbjct 41836 CACAGAAAACCGTTTATACATCGGTTGGTTCGGTGTTTTAATGATCCCAACATTATTAAC 41777 Query 170746 TGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAAT 170805 ||| | || ||||| | || |||||||| || |||||||| |||||||| || || Sbjct 41776 AGCTACAAGCTGCTTCATCATCGCTTTCATCGCAGCACCTCCAGTAGATATCGATGGTAT 41717 Query 170806 CAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGT 170865 | | |||||||| || || || | ||||| || |||||||| ||| | ||||| || | Sbjct 41716 CCGTGAACCAGTGGCTGGATCACTTTTATACGGAAACAACATTATCACAGGTGCAGTTAT 41657 Query 170866 TCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGA 170925 ||| ||| ||||| || || | |||||||| || | |||||||| || || | || Sbjct 41656 TCCTAGTTCTAACGCTATTGGTATTCACTTCTACCCAGTTTGGGAAGCTGCGTCTGTAGA 41597 Query 170926 CGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATT-GGAA 170984 ||||||| | |||||||| ||||||||||| | || | || |||||| ||||| || Sbjct 41596 CGAGTGGCTTTACAACGGTGGTCCTTACCAACTTGTAGTATTACACTTC-TTATTAGGTG 41538 Query 170985 TCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGA 171044 | || ||||||||| | | |||||||| ||| | |||| ||| | ||||||| Sbjct 41537 TAGCTTGCTACATGGGACGTGAATGGGAACTTAGCTACCGTTTAGGGATGCGTCCTTGGA 41478 Query 171045 TATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCAT 171104 | | ||||| | |||||| || ||| ||||||||| |||||||||| | || || ||| Sbjct 41477 TTTTCGTAGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCTTAGTTTACCCAA 41418 Query 171105 TCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCA 171164 | || || ||| ||||||||||||||||| ||||||| || ||||| |||||||||| Sbjct 41417 TTGGACAAGGTAGCTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCA 41358 Query 171165 TGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAG 171224 |||| || |||||||||||||||||||| || |||||||| ||||||||||| ||||| | Sbjct 41357 TGTTAGTATTCCAAGCAGAACACAACATTCTTATGCACCCATTCCATATGGCTGGTGTTG 41298 Query 171225 CAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTC 171284 | ||| |||| ||||| | | |||||||| |||||||||||||| || |||||| | Sbjct 41297 CTGGTGTGTTTGGTGGATCTTTATTCAGTGCTATGCACGGTTCTCTTGTAACATCTAGTT 41238 Query 171285 TAATCAGAGAGACAACTG-AGAACGAGAGTC--AAAACTACGGCTATAAGTTCGGACAAG 171341 ||||| | || ||||| ||| | | || |||||||| || || |||||||||| Sbjct 41237 TAATCCGTGA---AACTGAAGACGGCGTATCTGCTAACTACGGTTACAAATTCGGACAAG 41181 Query 171342 AAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGT 171401 |||||||||| || ||||| || ||||| || || ||||| || | ||||||||||| | Sbjct 41180 AAGAAGAAACTTACAACATCGTAGCTGCACACGGTTACTTTGGACGTTTAATCTTCCAAT 41121 Query 171402 ATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCT 171461 | || ||||||||||| ||| | |||||||||||| | |||| || || || || Sbjct 41120 ACGCGAGTTTCAACAACTCACGTGCTTTACACTTCTTCTTAGCTGCATGGCCAGTTGTAG 41061 Query 171462 GTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACT 171521 || | |||||||| || | ||| | |||| |||||||| ||| | ||||| ||||||| Sbjct 41060 GTATCTGGTTAACTGCTCTTGGTGTTAGTACTATGGCATTTAACTTAAACGGTTTCAACT 41001 Query 171522 TCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGT---ACCAACA--TGGGGAGATGT 171576 |||||||||||||||| ||| | ||| | || | ||||| |||| || | Sbjct 41000 TCAACCAATCAGTTGTTGAT-----AGTCAAGGTCGTGTGATCAACACTTGGGCTGACAT 40946 Query 171577 TCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCC 171636 | | ||| | || | | || |||||||| ||||| ||| | || || ||||||||||| Sbjct 40945 TATCAACCGTGCTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCC 40886 Query 171637 ACTAGACCTAGC---ATCTGCTGAGTCTACAACAGTTGCATTAACTGCACCT 171685 ||||| |||| |||| || ||| | |||||||||||| || ||| Sbjct 40885 TCTAGATTTAGCCGTATCTAATG-TTCTTC--CAGTTGCATTAAACGCTCCT 40837 >seq225 Length=49998 Score = 526 bits (582), Expect = 2e-144 Identities = 755/1056 (71%), Gaps = 35/1056 (3%) Strand=Plus/Plus Query 171784 AAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCG 171843 |||||| | |||||| | | ||||| |||||||| ||||||||||||| || || | Sbjct 37812 AAAGAGGTTTATTTGACTTAGTCGATGACTGGTTAAAACGAGATCGTTTCGTGTTTATTG 37871 Query 171844 GATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAG 171903 | ||||| || |||||| | || || || | || ||| | || || ||||| || Sbjct 37872 GTTGGTCAGGCCTTTTATTATTCCCAACCGCATTTCTTGCAGTTGGTGGATGGTTAACAG 37931 Query 171904 GAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAG 171963 | || ||||| || || || ||||| || ||||| | ||||| || ||| | || ||| Sbjct 37932 GTACGACTTTTGTTACATCTTGGTATACTCATGGATTAGCATCTTCTTATTTAGAAGGAT 37991 Query 171964 CAAACTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGT 172023 ||||| ||||||| ||||||||||||||| | | ||||||||| || | | Sbjct 37992 GTAACTTCTTAACTGTAGCAGTATCAACACCAGCAAACAGTATGGGTCACTCATTAATTT 38051 Query 172024 TCCTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTAT 172083 | ||||||||||||| || ||||||||| | || ||| ||||| | |||||| ||| Sbjct 38052 TATTATGGGGACCTGAAGCGCAAGGAGATTTCACTCGTTGGCTTCAAATTGGTGGATTAT 38111 Query 172084 GGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTA-GACAGTTT 172142 || ||| ||||| |||| || | ||||| | || || ||| || ||| | || || Sbjct 38112 GGGCTTTTATAGCACTACACGGTGCATTTGGTTTAATTGGATTC-TGTTTACGTCAATTC 38170 Query 172143 GAGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATT 172202 ||||| || | ||||| || || ||||| ||||||||| | |||||||| | | |||| Sbjct 38171 GAGATCGCTCGTCTTGTAGGTATTCGTCCATACAACGCAATTGCATTCTCTGGACCTATT 38230 Query 172203 GCAGTATTCACGAGCATCT---TTC-TAATATATCCATTAGGTC-AGCATAGTTGGTTCT 172257 || ||||| | ||| ||| |||| ||||| |||| | |||| |||||||||| Sbjct 38231 GCGGTATT----TGTTTCTGTATTCTTAATTTATCCTCTAGGACAAGCA-AGTTGGTTCT 38285 Query 172258 TCGCACCTTCATTTGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCC 172317 |||| || ||||| || ||||| || || || | | | |||||| |||| ||||||| Sbjct 38286 TCGCTCCAAGTTTTGGGGTTGCAGCTATTTTCCGATTTTTATTATTCTTACAAGGTTTCC 38345 Query 172318 ACAATATAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCAT 172377 | || || ||||||||||| |||||||||||||||||||| || | || || |||| Sbjct 38346 ATAACTGGACACTTAATCCATTCCATATGATGGGTGTAGCAGGGATTTTAGGAGGTGCAT 38405 Query 172378 TACTATGTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAAT 172437 || ||| ||| || ||||| || |||||| | || ||| | | |||||| Sbjct 38406 TATTATCTGCAATTCATGGAGCCACAGTAGAAAATACACTATTTGAAGA----------- 38454 Query 172438 ACACTGAAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAG 172497 || | | | | ||| | || ||| | || || || ||||| ||||| Sbjct 38455 ----TG--GTGATGCTGCAAAC----ACATTCCGTGCGTTTACACCAACACAATCAGAAG 38504 Query 172498 AAACTTATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTT 172557 |||||||| ||| | || || || ||||||||||| || || |||||| |||| || | Sbjct 38505 AAACTTATTCGATGGTAACAGCGAATAGATTCTGGTCTCAAATTTTTGGTGTAGCTTTCT 38564 Query 172558 CAAACAAAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACAT 172617 | |||||| | | | || ||| | ||||| || || ||||| | ||| | |||||| Sbjct 38565 CGAACAAACGTTGGCTTCATTTCTTCATGTTATTTGTTCCTGTAACAGGTTTATGGACAA 38624 Query 172618 CATCTATAGGTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAG 172677 ||| | ||||| || ||| | ||| | || | ||||||||||| || |||||||||| Sbjct 38625 GTTCTTTTGGTATTGTTGGTTTAGCATTAAATTTAAGAGCATACGATTTCGTATCTCAAG 38684 Query 172678 AGATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTT- 172736 || | | || || ||||| ||||| |||||||| ||||||||||| || | |||| || Sbjct 38685 AGCTTCGTGCGGCTGAAGATCCAGAATTTGAAACTTTCTACACTAAAAATA-TCTTATTA 38743 Query 172737 AATGAAGGTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTC 172796 ||||||||||| ||| | |||||| | | || ||||| ||||| || ||||| ||| Sbjct 38744 AATGAAGGTATTAGATCGTGGATGGCTGCACAAGACCAACCACATGAAAATTTTGTATTC 38803 Query 172797 CCAGAAGAAGTCTTGCCACGAGGCAACGCACTATAA 172832 ||||| || || || ||||| || ||||| || ||| Sbjct 38804 CCAGAGGAGGTTTTACCACGTGGAAACGCCCTTTAA 38839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570227091965640